Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80810 55 / 1e-09 Tudor/PWWP/MBT superfamily protein (.1.2) AT4G32620 54 / 5e-09 Enhancer of polycomb-like transcription factor protein (.1.2) AT5G10950 54 / 5e-09 Tudor/PWWP/MBT superfamily protein (.1) AT1G15940 53 / 1e-08 Tudor/PWWP/MBT superfamily protein (.1) AT5G47690 52 / 2e-08 binding (.1.2.3) AT4G02070 48 / 4e-07 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) AT4G31880 45 / 7e-06 unknown protein AT1G05830 44 / 1e-05 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) AT2G31650 39 / 0.0007 SDG27, TRX1, ATX1 SET DOMAIN PROTEIN 27, homologue of trithorax (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030133 [exp] 195 / 2e-63 AT1G15940 63 / 4e-11 Tudor/PWWP/MBT superfamily protein (.1) Lus10021959 [exp] 52 / 2e-08 AT4G32620 870 / 0.0 Enhancer of polycomb-like transcription factor protein (.1.2) Lus10041252 [exp] 52 / 2e-08 AT4G32620 923 / 0.0 Enhancer of polycomb-like transcription factor protein (.1.2) Lus10026078 [exp] 49 / 3e-07 AT4G31880 228 / 1e-66 unknown protein Lus10039082 [exp] 46 / 2e-06 AT5G47690 1661 / 0.0 binding (.1.2.3) Lus10038777 [exp] 46 / 3e-06 AT5G47690 1579 / 0.0 binding (.1.2.3) Lus10018332 [exp] 46 / 3e-06 AT4G31880 464 / 2e-149 unknown protein Lus10002307 [exp] 45 / 4e-06 AT4G31880 214 / 4e-61 unknown protein Lus10017121 [exp] 45 / 4e-06 AT4G31880 473 / 2e-152 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G034900 [exp] 58 / 1e-10 AT4G32620 613 / 0.0 Enhancer of polycomb-like transcription factor protein (.1.2) Potri.018G020400 [exp] 58 / 2e-10 AT4G31880 389 / 3e-120 unknown protein Potri.006G263300 [exp] 55 / 2e-09 AT4G31880 424 / 8e-133 unknown protein Potri.006G246200 [exp] 54 / 4e-09 AT4G32620 1021 / 0.0 Enhancer of polycomb-like transcription factor protein (.1.2) Potri.003G181300 [exp] 51 / 3e-08 AT1G80810 231 / 3e-64 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.001G046500 [exp] 50 / 8e-08 AT4G31880 267 / 1e-76 unknown protein Potri.002G232800 [exp] 50 / 9e-08 AT1G05830 1261 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.016G005400 [exp] 49 / 2e-07 AT5G47690 1698 / 0.0 binding (.1.2.3) Potri.006G004750 [exp] 49 / 2e-07 AT5G47690 1681 / 0.0 binding (.1.2.3) Potri.014G146300 [exp] 46 / 3e-06 AT1G05830 1273 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009948 pacid=23150094 polypeptide=Lus10009948 locus=Lus10009948.g ID=Lus10009948.BGIv1.0 annot-version=v1.0 ATGGTGGATTTAGGCGACAGAGATGACAACAGAATCGTGGGGAAAAGGGTGAAAGTGTACTGGTCAGGATCAAGGAGATGGTTCACTGGACGGATCAAAA GTTTCCACAGGAGGAAGAAGCTGCACAATGTGGTGTATGAAGATGGCGACAAGGAGGATTTGGAGCTGAGGAAAGAGCTGTTCGAGCTAGAGATTCTTCC GCAAGAAGATTTCAAGATCGTCAGGTGTGATGAACACAGAAGGAGGATTTCTGAGGTTAGGAGGACCAAAGGTTCAGATATTGATGAGGATAATGTTGCA TCAGCTGATGATGATGATGATAATGATGATGGCAATAGTGGTTCACATCAATCTGAAGGAGGTACTATTTCTAAGGATGATGAAGATGGGAGTTTAGAAG AAGAAGAAGCTGGGGATAGCGAAGAAGTCTAA
AA sequence Show only first row Show all	>Lus10009948 pacid=23150094 polypeptide=Lus10009948 locus=Lus10009948.g ID=Lus10009948.BGIv1.0 annot-version=v1.0 MVDLGDRDDNRIVGKRVKVYWSGSRRWFTGRIKSFHRRKKLHNVVYEDGDKEDLELRKELFELEILPQEDFKIVRCDEHRRRISEVRRTKGSDIDEDNVA SADDDDDNDDGNSGSHQSEGGTISKDDEDGSLEEEEAGDSEEV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15940			Tudor/PWWP/MBT superfamily pro...		Lus10009948 [exp]	0	1
AT1G15940			Tudor/PWWP/MBT superfamily pro...		Lus10030133 [exp]	1.0	0.9138
AT1G29270			unknown protein		Lus10007304 [exp]	1.4	0.8409
AT1G76140			Prolyl oligopeptidase family p...		Lus10021835 [exp]	3.2	0.7859
AT4G37380			Tetratricopeptide repeat (TPR)...		Lus10026650 [exp]	5.7	0.7809
AT5G10310			unknown protein		Lus10025740 [exp]	6.5	0.8021
AT5G04850		VPS60.2	SNF7 family protein (.1.2)		Lus10043454 [exp]	6.8	0.7342
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10019652 [exp]	13.5	0.7445
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10020723 [exp]	15.6	0.7277
AT5G11340			Acyl-CoA N-acyltransferases (N...		Lus10008088 [exp]	18.0	0.7404
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10021037 [exp]	22.0	0.7810

Compare expression of checked genes

Lus10009948 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.