Plant FIBer expression Database

Lus10009950 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G51400 71 / 3e-17 Photosystem II 5 kD protein (.1)
AT3G21055 63 / 4e-14 PSBTN photosystem II subunit T (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030132
[exp]
137 / 1e-43 AT1G51400 92 / 2e-25 Photosystem II 5 kD protein (.1)
Lus10027359
[exp]
74 / 3e-18 AT3G21055 81 / 3e-21 photosystem II subunit T (.1)
Lus10014908
[exp]
69 / 2e-16 AT1G51400 81 / 2e-21 Photosystem II 5 kD protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G256900
[exp]
87 / 9e-24 AT1G51400 91 / 3e-25 Photosystem II 5 kD protein (.1)
Potri.009G052500
[exp]
87 / 2e-23 AT1G51400 96 / 3e-27 Photosystem II 5 kD protein (.1)
PFAM info
Representative CDS sequence
>Lus10009950 pacid=23150107 polypeptide=Lus10009950 locus=Lus10009950.g ID=Lus10009950.BGIv1.0 annot-version=v1.0
ATGGCGTCGATGACAATGGCTGCATCTTTCTCATCCACCATGATTGCTGCTAAGCCCATCACAGCTCCACGGAGAGGAATGTTTGTGGTGGCCAAGGCAT
CAAATGATATGAAGGCAGAGAATAAGGCAGAGAGCAGCAGCAACAATGGAAGGAGGGATTTGATGTTTGGAGCAGTAGCAGCAGCAGCTTACTCCATTGC
CAGCGTTGCAATGGCTGATGAGCCCAAGAGAGGAACCCCTGAAGCCAAGAAGAAGTACGCTCCTATATGTGTGACAATGCCTACTGCTCGCATCTGTCGC
AACTGA
AA sequence
>Lus10009950 pacid=23150107 polypeptide=Lus10009950 locus=Lus10009950.g ID=Lus10009950.BGIv1.0 annot-version=v1.0
MASMTMAASFSSTMIAAKPITAPRRGMFVVAKASNDMKAENKAESSSNNGRRDLMFGAVAAAAYSIASVAMADEPKRGTPEAKKKYAPICVTMPTARICR
N

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G51400 Photosystem II 5 kD protein (.... Lus10009950
[exp]
0 1
AT1G51400 Photosystem II 5 kD protein (.... Lus10030132
[exp]
1.4 0.9597
AT1G67700 unknown protein Lus10006442
[exp]
3.3 0.9605
AT5G64040 PSAN, PSI-N photosystem I reaction center ... Lus10003849
[exp]
6.3 0.9568
AT5G16660 unknown protein Lus10026866
[exp]
6.7 0.9128
AT1G30380 PSAK photosystem I subunit K (.1) Lus10012086
[exp]
8.5 0.9568
AT1G18170 FKBP-like peptidyl-prolyl cis-... Lus10038954
[exp]
10.5 0.9517
AT3G47650 DnaJ/Hsp40 cysteine-rich domai... Lus10002020
[exp]
11.8 0.9228
AT1G79040 PSBR photosystem II subunit R (.1) Lus10026205
[exp]
12.2 0.9492
AT4G05180 PSII-Q, PSBQ, P... photosystem II subunit Q-2 (.1... Lus10018385
[exp]
13.5 0.9486
AT4G05180 PSII-Q, PSBQ, P... photosystem II subunit Q-2 (.1... Lus10007627
[exp]
15.0 0.9485

Lus10009950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.