Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04590 965 / 0 SIR sulfite reductase (.1) AT2G15620 92 / 4e-19 ATHNIR, NIR1 ARABIDOPSIS THALIANA NITRITE REDUCTASE, nitrite reductase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030131 [exp] 1313 / 0 AT5G04590 1017 / 0.0 sulfite reductase (.1) Lus10027360 [exp] 1036 / 0 AT5G04590 985 / 0.0 sulfite reductase (.1) Lus10014907 [exp] 274 / 2e-81 AT5G19450 896 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10014059 [exp] 77 / 2e-14 AT2G15620 960 / 0.0 ARABIDOPSIS THALIANA NITRITE REDUCTASE, nitrite reductase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G052600 [exp] 1095 / 0 AT5G04590 1007 / 0.0 sulfite reductase (.1) Potri.001G257000 [exp] 1087 / 0 AT5G04590 1054 / 0.0 sulfite reductase (.1) Potri.004G140800 [exp] 89 / 3e-18 AT2G15620 1021 / 0.0 ARABIDOPSIS THALIANA NITRITE REDUCTASE, nitrite reductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03460 [flax] [poplar] NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain PF01077 [flax] [poplar] NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
Representative CDS sequence Show only first row Show all	>Lus10009951 pacid=23150117 polypeptide=Lus10009951 locus=Lus10009951.g ID=Lus10009951.BGIv1.0 annot-version=v1.0 ATGGCGGCGGCGACGACGATTGGAGCTGCCAACGCGGCAGTTTTCAACGAACCAACCAAGATTCAGCTCCGTCGCTTCGACGGATTGACGAGGAGTTCTT CCAAGCATTTCAATGCGTTCTCGGTTCCTTCTTCCAGGCACCCTTTCTTCATCAAGGCCGTTTCCACCCCGGTGAAGCCTCCGGGGATTGCGACGAAGAG GAGCAAGGTAGAAATCATCAAAGAGAACAGCAATTTCATCAGGTACCCACTAAACGAAGAGCTGTTAACAGATGCACCGAATGTTAACGAGAGTGCCGTA CAGCTAATCAAATTCCATGGGAGCTACCAACAGTATGATCGAGAGGAAAGAGGTGGTAGATCCTATTCCTTCATGCTCCGTACCAAAAACCCTTGTGGGA AAGTACCAAACAAGCTCTACTTAACCATGGACGACCTGGCCGATCAATTTGGGATTGGGACTCTACGCCTCACCACGAGGCAAACGTTCCAGCTCCATGG TGTTGTTAAGAAGGATCTCAAGACTGTGATGAGTAGCATCATTAACAGCATGGGTTCCACCTTAGGAGCCTGTGGTGATCTCAACAGGAATGTTCTTGCC CCACCTGCTCCGTTTGTGAGGGAAGACTATATGTTTGCTCAGAAGACTGCGGAGGATATTGCAGCGCTTCTTACTCCGCAGTCTGGATTCTACTATGACA TGTGGGTGGATGGGGAGAAGATCATGACTGCTGAAGAATCTCCTGAGGTTACGCAGGCTCGAAATGACAATTCTCATGGCACGAATTTTGCTGATTCCCC TGAACCCATCTATGGAACTCAGTTTTTGCCTAGGAAGTTCAAGGTTGCTGTCACTGTTCCTACTGATAACTCTGTGGATATTCTGACGAATGACATTGGT GTGGTTGTCGTATCTGATGACGATGGGGTGCCTCAAGGGTTCAATATATATGTTGGTGGTGGTATGGGAAGAACACATAGGGTGGAGACTACTTTCCCCA GACTAGCTGAACCTTTAGGTTATGTGCCCAAAGAGGACATCTTGTATGCAATTAAAGCTATTGTTGTTACCCAACGGGAGAACGGCAGGAGAGACGATCG AAGATACAGTAGAATGAAGTATTTGATCGACTCCTGGGGGATTGAGAAGTTCAGAAGCGAAGCTGAGAAATACTATGGAAAGAAATTTGAACCCTTCCGC GAGTTGCCACAGTGGGAATTTAAAGGTCACTTAGGATGGCAAGAACAGGGTGATGGTAAATGGTTCTATGGGCTCCATGTTGACAATGGCCGTGTTGGAG GGAAAATGAAGAAGGCATTGAGAGAGGTTATAGAGAAGTACAACTTGGATGTTCGTATCACGCCCAACCAGAACATAATTCTATGTGGAATTACAAAATC ATGGAAGCGAGCTATCACCATGACACTTGCACAGACAGGCTTACTGCAACCTAAATATGTAGACGCACTCAACTTGACAGCCATGGCATGTCCAGCGTTC CCTCTTTGCCCATTGGCAATAACTGAAGCTGAGCGTGGGATACCTGACATCCTGAAACGTGTTAGAGCTGTGTTTGAGAAGGTTGGTCTGAAGTACAGTG ATTCTGTGGTAATTAGAGTAACTGGATGTCCTAATGGCTGTGCAAGACCATACATGGCTGAACTTGGACTCGTTGGAGATGGTCCGAATAGTTACCAGAT CTGGCTAGGTGGAGCTCCGAACCAAACTGTGTTGGCTAGAACATTCATGAACAAGGTTAAGGTTCAGGACCTTGAAACTGTCTTTGAACCTCTTTTCTAT CATTGGAAACGATCAAGGAAATCAGGGGAGTCATTTGGTGAATTTGCAAACCGAAAGAGATTTGAGACATTGCAAGAGTGGGTAGAGAAATGGGAAGGGA TTGAAGCTGCACCAAGAAGGAACGTGCTGAGGCTGTTCTCGGACAAGGATACGTTCAAAAAGATGGATGAACTAGCAAAGTTGCAGAACAAGACTGCTCA TCAGTTGGCAATGGAAGTCCTTCGCAATTACGTCGCAGCGAAGGAGAGCGGTAAAGCAGAATGA
AA sequence Show only first row Show all	>Lus10009951 pacid=23150117 polypeptide=Lus10009951 locus=Lus10009951.g ID=Lus10009951.BGIv1.0 annot-version=v1.0 MAAATTIGAANAAVFNEPTKIQLRRFDGLTRSSSKHFNAFSVPSSRHPFFIKAVSTPVKPPGIATKRSKVEIIKENSNFIRYPLNEELLTDAPNVNESAV QLIKFHGSYQQYDREERGGRSYSFMLRTKNPCGKVPNKLYLTMDDLADQFGIGTLRLTTRQTFQLHGVVKKDLKTVMSSIINSMGSTLGACGDLNRNVLA PPAPFVREDYMFAQKTAEDIAALLTPQSGFYYDMWVDGEKIMTAEESPEVTQARNDNSHGTNFADSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIG VVVVSDDDGVPQGFNIYVGGGMGRTHRVETTFPRLAEPLGYVPKEDILYAIKAIVVTQRENGRRDDRRYSRMKYLIDSWGIEKFRSEAEKYYGKKFEPFR ELPQWEFKGHLGWQEQGDGKWFYGLHVDNGRVGGKMKKALREVIEKYNLDVRITPNQNIILCGITKSWKRAITMTLAQTGLLQPKYVDALNLTAMACPAF PLCPLAITEAERGIPDILKRVRAVFEKVGLKYSDSVVIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGAPNQTVLARTFMNKVKVQDLETVFEPLFY HWKRSRKSGESFGEFANRKRFETLQEWVEKWEGIEAAPRRNVLRLFSDKDTFKKMDELAKLQNKTAHQLAMEVLRNYVAAKESGKAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04590		SIR	sulfite reductase (.1)		Lus10009951 [exp]	0	1
AT3G22890		APS1	ATP sulfurylase 1 (.1)		Lus10006629 [exp]	3.2	0.8980
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10021002 [exp]	8.4	0.8867
AT1G13090		CYP71B28	"cytochrome P450, family 71, s...		Lus10002670 [exp]	42.5	0.8820
AT5G65380			MATE efflux family protein (.1...		Lus10002645 [exp]	46.8	0.8805
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Lus10013282 [exp]	47.6	0.8428
AT4G37990		CAD-B2, ATCAD8,...	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10025706 [exp]	53.6	0.8769
AT4G14680		APS3	Pseudouridine synthase/archaeo...		Lus10039389 [exp]	60.7	0.8609
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10005951 [exp]	62.7	0.8727
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Lus10014710 [exp]	71.4	0.8374
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10010988 [exp]	76.0	0.8369

Compare expression of checked genes

Lus10009951 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.