Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57490 412 / 1e-143 Ribosomal protein S5 family protein (.1) AT2G41840 411 / 4e-143 Ribosomal protein S5 family protein (.1) AT1G58380 407 / 6e-142 XW6 Ribosomal protein S5 family protein (.1) AT1G58684 407 / 7e-142 Ribosomal protein S5 family protein (.1) AT1G59359 407 / 7e-142 Ribosomal protein S5 family protein (.1) AT1G58983 407 / 7e-142 Ribosomal protein S5 family protein (.1) AT2G33800 71 / 2e-13 EMB3113 EMBRYO DEFECTIVE 3113, Ribosomal protein S5 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030130 [exp] 464 / 3e-164 AT2G41840 412 / 1e-146 Ribosomal protein S5 family protein (.1) Lus10014909 [exp] 461 / 4e-163 AT3G57490 414 / 9e-148 Ribosomal protein S5 family protein (.1) Lus10027358 [exp] 461 / 4e-163 AT3G57490 414 / 1e-147 Ribosomal protein S5 family protein (.1) Lus10030129 [exp] 442 / 2e-156 AT3G57490 390 / 1e-138 Ribosomal protein S5 family protein (.1) Lus10025445 [exp] 61 / 5e-10 AT2G33800 357 / 3e-124 EMBRYO DEFECTIVE 3113, Ribosomal protein S5 family protein (.1) Lus10015317 [exp] 61 / 5e-10 AT2G33800 358 / 2e-124 EMBRYO DEFECTIVE 3113, Ribosomal protein S5 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G256800 [exp] 446 / 2e-157 AT1G58684 405 / 7e-144 Ribosomal protein S5 family protein (.1) Potri.006G052400 [exp] 431 / 3e-151 AT3G57490 417 / 7e-149 Ribosomal protein S5 family protein (.1) Potri.016G055000 [exp] 431 / 4e-151 AT2G41840 417 / 1e-148 Ribosomal protein S5 family protein (.1) Potri.011G053900 [exp] 67 / 3e-12 AT2G33800 246 / 1e-80 EMBRYO DEFECTIVE 3113, Ribosomal protein S5 family protein (.1) Potri.004G045700 [exp] 64 / 4e-11 AT2G33800 316 / 6e-108 EMBRYO DEFECTIVE 3113, Ribosomal protein S5 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF03719 [flax] [poplar] Ribosomal_S5_C Ribosomal protein S5, C-terminal domain CL0196 [flax] [poplar] DSRM PF00333 [flax] [poplar] Ribosomal_S5 Ribosomal protein S5, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10009952 pacid=23150130 polypeptide=Lus10009952 locus=Lus10009952.g ID=Lus10009952.BGIv1.0 annot-version=v1.0 ATGTCTGACAGAGTAGCCGGCGGTGATCGACCACCACGCAGAGGGTTCGGCGGTCGCGGTGGAGACCGTGGAGGAAGAGGAGGACGCCGCCGCGGCGGTC GACGTGAGGAGGAAGAAAAATGGGTTCCGGTCACCAAGCGGGGCCGTCTGGTGAGGGAGGGTAAGATAAAAGCCTTGGAGCAGATCTACCTCCACTCCCT CCCAATCAAGGAGTACCAGATCATCGACACTCTCGTCGGACCTTCCCTCAAGGATGAGGTGATGAAAATCTCCCCCGTCCAGAAGCAGACTCGCGCCGGT CAGAGGACTCGATTCAAGGCCTTCGTCGTCGTCGGAGACGGGAATGGCCATGTTGGATTGGGCGTGAAGTGCTCCAAGGAAGTTGCTACTGCTATTCGTG GAGCAATTATCCTTGCTAAGCTCTCTGTTATCCCGGTCAGGAGGGGTTACTGGGGAAACAAGATCGGTTTGCCTCATACAGTGCCCTGCAAGGTGACTGG TAAGTGTGGTTCCGTTACCGTTAGGATGGTTCCTGCTCCTCGTGGTGCTGGAATCGTTGCTGCTCGTGTGCCGAAGAAGGTTCTTCAGTTTGCTGGGATT GAAGATGTTTTCACTTCCTCCCGTGGCTCTACTAAGACTCTTGGCAACTTCGTTAAGGCTACCTTTGACTGTCTCCTGAAGACCTACGGATTCTTGACGC CTGATTTCTGGAAGGATACCCGCTTCAGCAAATCTCCATTCCAAGAGTACACTGACCTGTTAGGAAAGCCAACCAAGGCTCTTGTTCTTGAGGATGTTGA GAGGCCGGCGGAGACCGACCACCACGCAGACCCTCATCACGAAGACCCGCCCCGCGCCTGTCGGAGGACTGGATTCAAGGCCTGCGTCGTCGTCGGAGAC TGTAATGGCCACGTCGGATTGGGCGTGAAGTGCTCCAAGGAAGTTGCTACTGCTATTCGTGGAGCAATTATCCTTGCTAAGCTCTCTGTTATCCCGGTCA GGAGGGGTTACTGGGGAAACAAGATCGGTTTGCCTCATACAGTGCCCTGCAAGGTTACTGGGAAATGTGGTTCCGTTACTGTGAGGATGGTTCCTGCTCC TCGCGGTGCTGGAATCGTTGCTGCTCGCGTGCCGAAGAAGGTTCTTCAGTTTGCTGGGATTGAAGATGTTTTCACTTCCTCCCGTGGCTCTACAAAGACC CTTGGCAACTTCGTCAAGGCTACTTTTGACTGTCTCCTGAAGACCTATGGGTTCTTGACGCCCGATTTCTGGAAGGATACCCGTTTCAGCAAGTCTCCAT TCCAAGAGTACACTGATCTGTTGGGAAAGCCAGCCAAGGCTCTAGTCCTTGAGGATGTCGAGCGGGTAGCAGAAGCTTGA
AA sequence Show only first row Show all	>Lus10009952 pacid=23150130 polypeptide=Lus10009952 locus=Lus10009952.g ID=Lus10009952.BGIv1.0 annot-version=v1.0 MSDRVAGGDRPPRRGFGGRGGDRGGRGGRRRGGRREEEEKWVPVTKRGRLVREGKIKALEQIYLHSLPIKEYQIIDTLVGPSLKDEVMKISPVQKQTRAG QRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGLPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGI EDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPDFWKDTRFSKSPFQEYTDLLGKPTKALVLEDVERPAETDHHADPHHEDPPRACRRTGFKACVVVGD CNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGLPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKT LGNFVKATFDCLLKTYGFLTPDFWKDTRFSKSPFQEYTDLLGKPAKALVLEDVERVAEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57490			Ribosomal protein S5 family pr...		Lus10009952 [exp]	0	1
AT2G42740		RPL16A	ribosomal protein large subuni...		Lus10029824 [exp]	1.0	0.9559
AT5G09500			Ribosomal protein S19 family p...		Lus10024865 [exp]	3.0	0.9434
AT4G36130			Ribosomal protein L2 family (....		Lus10041923 [exp]	3.5	0.9544
AT4G20020			unknown protein		Lus10036589 [exp]	3.5	0.9306
AT1G16870			mitochondrial 28S ribosomal pr...		Lus10007056 [exp]	4.0	0.9211
AT3G05590		RPL18	ribosomal protein L18 (.1)		Lus10031485 [exp]	4.5	0.9420
AT5G40770		ATPHB3	prohibitin 3 (.1)		Lus10032072 [exp]	4.7	0.9310
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10020794 [exp]	5.3	0.9364
AT3G49080			Ribosomal protein S5 domain 2-...		Lus10014970 [exp]	5.3	0.9043
AT5G60960		PNM1	PPR protein localized to the n...		Lus10017862 [exp]	5.5	0.9348

Compare expression of checked genes

Lus10009952 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.