Plant FIBer expression Database

Lus10009954 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G51405 132 / 2e-33 myosin-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003186
[exp]
543 / 0 AT1G51405 274 / 1e-87 myosin-related (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G256700
[exp]
329 / 2e-107 AT1G51405 327 / 8e-107 myosin-related (.1)
Potri.009G052400
[exp]
317 / 4e-103 AT1G51405 294 / 9e-94 myosin-related (.1)
PFAM info
Representative CDS sequence
>Lus10009954 pacid=23150076 polypeptide=Lus10009954 locus=Lus10009954.g ID=Lus10009954.BGIv1.0 annot-version=v1.0
ATGGAGAAATCATCTACAGTAACGCCATTGACAACGAGGAGGCCGAAATGGAAGTACCCACAACCGCAACAGACTCCACGGATCCTCCACTTGCCACGCA
GGCCTCGCCGGAAGATCCTCCCGCCGCCACCTCCGCCGCCGCCATCGGCGTCGAAACCCAGTTCGAGGGTTGACAGGAGAGGGAGGCTGGACTGCTTGTT
TGACCAGGAGAGGGAGTTTAAAAAAGGAGGAGCTATCCCGATCGTGACTGTGAGCGGCGGAGTTGAATTGGAGAGGAGGAGAGAAAGAGTCGAGGAGAGA
GAAAGTTCGTCGGCGGCGGTGGTGGTGGAAGAGGAGAAGTGGCGGTTTCAAGCGGAGATGTTGAGAGCGGAGTGTAATTTGCTGAGGATGGAAAAGGAGA
TTGGTTTGAATAAGATAGAGAGGAGGAAAGCTCATATGGAGCGGACTCTGCAATCTGCTCTTCACAGTCTGCTTTCCGGTAGGGAAAGGATTTGCAATGG
GGAGAATGGGAGGGTGGAATTGGAGGAAGAGATTGGGAGATTGGTTGTGAAGCTTGAGAAATTGCAGAGGAGATTATCATCAAGGACGAGAAGAGATTGC
AGTGTTAAGAAAATTCAGGAGATGGCTGGGGAAAGCTTGTGTATCAGAAGAGATGATGGGAATGGCGTCTCACAGTCACCGGCCAACAACTTCAATGTGG
TGCAGATAGAGATATTGAGGAGGAAGATGGAAGGATTGTCGAGAGGGAGATTGTTGGAGAGGATGGAGGATGAATATGGATCAATGCTTTCAACGGCTAA
TAGTTCTGCAGCTAGCTCTGCCTCTAATTCCAGGAGATTTGAACTCCCTCCTCCTCCTGAAAAGAATCTGGCTTCTGTCAGAAAACAGCAATCTTTCAAG
GAGAATAAGAAGAGCAGCAAGGAAGAACAGCAACAGAAAGGAGGGTGTGGAGGAAGCTGTAAGGCGATAGTAAGGAGAGTGATGGAGCAAGTTAGAGCAG
AGACAGAACAATGGTCACAAATGCAAGCAATGTTGGGGCAAGTTAGAGATGAGATGGAACAACTCCAAGCTTCCAGGCAGTTTTGGGAGGATAAAGCACT
TGATTCCGATTCTAAACTCCAGAATCTACACTCTACTGTGGAGGAATGGAGACAGAAAGCCATTTCTTTTGAGGAGAAAGCAAAGGAGCTTGAGAAGGAG
ATTCATGGGTTGAAGAAGTTGAAATCTAAAGATAGATCCACCAGGGGAAGAAATGTACCGGCTGGTAGTCCGAAGAACGAAACGGAGGAGAAACGGGTTC
TGGTTTGCAGGATGAAGGAGAATCGAAATGGCGAAGAACAGCAGTTTAGGCTGAAGGATATGTTGAGGGAAGAGAGGAGAAAGTCGATCTCAGGGGTGAA
GAGGTCGCCATTCAGAGATTTGGGTAATACTACTCATTGCCGTTAA
AA sequence
>Lus10009954 pacid=23150076 polypeptide=Lus10009954 locus=Lus10009954.g ID=Lus10009954.BGIv1.0 annot-version=v1.0
MEKSSTVTPLTTRRPKWKYPQPQQTPRILHLPRRPRRKILPPPPPPPPSASKPSSRVDRRGRLDCLFDQEREFKKGGAIPIVTVSGGVELERRRERVEER
ESSSAAVVVEEEKWRFQAEMLRAECNLLRMEKEIGLNKIERRKAHMERTLQSALHSLLSGRERICNGENGRVELEEEIGRLVVKLEKLQRRLSSRTRRDC
SVKKIQEMAGESLCIRRDDGNGVSQSPANNFNVVQIEILRRKMEGLSRGRLLERMEDEYGSMLSTANSSAASSASNSRRFELPPPPEKNLASVRKQQSFK
ENKKSSKEEQQQKGGCGGSCKAIVRRVMEQVRAETEQWSQMQAMLGQVRDEMEQLQASRQFWEDKALDSDSKLQNLHSTVEEWRQKAISFEEKAKELEKE
IHGLKKLKSKDRSTRGRNVPAGSPKNETEEKRVLVCRMKENRNGEEQQFRLKDMLREERRKSISGVKRSPFRDLGNTTHCR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G51405 myosin-related (.1) Lus10009954
[exp]
0 1
AT2G38150 alpha 1,4-glycosyltransferase ... Lus10004828
[exp]
2.8 0.8109
AT2G34480 Ribosomal protein L18ae/LX fam... Lus10023456
[exp]
3.3 0.7778
AT5G50090 unknown protein Lus10004229
[exp]
8.1 0.8227
AT5G52280 Myosin heavy chain-related pro... Lus10029303
[exp]
9.9 0.7850
AT1G18440 Peptidyl-tRNA hydrolase family... Lus10042977
[exp]
11.1 0.7513
AT4G24320 Ubiquitin carboxyl-terminal hy... Lus10027445
[exp]
11.4 0.7010
AT1G13570 F-box/RNI-like superfamily pro... Lus10006346
[exp]
13.4 0.7574
AT2G02850 ARPN plantacyanin (.1) Lus10018938
[exp]
14.0 0.7740
AT2G37680 PAT3, FRY1, FHY... unknown protein Lus10023781
[exp]
16.7 0.7930
AT5G66530 Galactose mutarotase-like supe... Lus10041758
[exp]
17.9 0.7505

Lus10009954 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.