Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51410 548 / 0 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G19440 529 / 0 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 380 / 2e-132 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09480 370 / 3e-128 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09490 364 / 3e-126 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G09500 351 / 3e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT1G66800 338 / 4e-116 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G15950 293 / 3e-98 IRX4, ATCCR1, CCR1 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) AT5G58490 287 / 7e-96 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G35420 275 / 3e-91 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039595 [exp] 463 / 3e-165 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014363 [exp] 417 / 4e-147 AT5G19440 420 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026070 [exp] 416 / 8e-147 AT5G19440 419 / 4e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002300 [exp] 416 / 2e-146 AT5G19440 423 / 2e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002302 [exp] 404 / 5e-142 AT5G19440 413 / 2e-145 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10008668 [exp] 381 / 7e-133 AT5G19440 388 / 9e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024130 [exp] 390 / 3e-129 AT5G09860 933 / 0.0 nuclear matrix protein-related (.1.2) Lus10029484 [exp] 345 / 2e-119 AT5G19440 355 / 1e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019732 [exp] 337 / 1e-115 AT5G19440 349 / 3e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G052000 [exp] 580 / 0 AT1G51410 563 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G256400 [exp] 571 / 0 AT5G19440 552 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057600 [exp] 482 / 7e-173 AT5G19440 474 / 7e-170 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057500 [exp] 443 / 2e-157 AT5G19440 444 / 1e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057800 [exp] 422 / 6e-149 AT5G19440 435 / 5e-154 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G045000 [exp] 302 / 1e-101 AT1G15950 484 / 3e-173 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.003G181400 [exp] 300 / 4e-101 AT1G15950 503 / 1e-180 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045500 [exp] 296 / 2e-99 AT1G15950 505 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G046400 [exp] 295 / 7e-99 AT1G15950 510 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G046100 [exp] 295 / 1e-98 AT1G15950 511 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10009955 pacid=23150116 polypeptide=Lus10009955 locus=Lus10009955.g ID=Lus10009955.BGIv1.0 annot-version=v1.0 ATGAGCTCCGGCGAAGGCCAAACCGTTTGCGTCACCGGCGCCTCCGGCTACATCGCCTCTTGGATCGTCAAGCTCCTCCTCTCTCGCGGCTACACTGTCA AGGCCTCCGTCCGCGATCCAAACGATCCGAAGAAGACCGAACACTTGCGCGCTCTCGACGGAGCTTCCGACCGACTGTTGCTGTTCAAGGCAAATCTGCT GGAGGAAGGCTCGTTTGATTCCGGCGTCGAAGGCTGCGTCGCCGTTTTCCACACCGCTTCCCCTTTCTATCACGACGTCAAGGATCCTCAGCTAGAATTG ATTGATCCGGCGTTGAAAGGCACGCTGAATGTGCTGAATTCATGTGCGAAAACTCCGTCCGTCAAGCGAGTTGTCTTGACGTCTTCGATTGCTGCAGTGG CTTACAATGGCAAACCACGTACTCCAGAAGTTGTAGTTGATGAGACTTGGTTTTCGAACCCTGACTTTTGCAGAGAGTCTAAGCTTTGGTACGTGGTCTC CAAAACACTGGCAGAGGATGCTGCATGGAAATTTGCAAAAGAGAAAGGCATGGACTTGGTTGCCATAAACCCTGCTATGGTTATTGGTCCTCTGTTGCAG CCAACACTTAACACTAGTGCCGCAGCTGTTCTAAGCATCATGAAAGGAGCTCAGACATTCCCGAACGCTACATTTGGATGGGTACACGTGAAAGATGTGG CAGAGGCACACATCAAAGCTTTTGAGATCCCATCAGCTAATGGAAGATATTGTTTGGTTGAGACAGTTGCACACTACTCTGAAGTTGTGAAAACCCTAAA GAAACTTTACCCTAGTGTCCAACTCCCGGAAAAGTGTGCGGATGACAAGCCTTCCGTTCCAACATACCAGGTTTCCAAGGAGAAGGCAAAAACCTTGGGG ATTGAGTTCATCCCCTTGGAAGTAAGTCTGAAGGAGACTGTGGATAGCTTGAAGGAGAAAGGATTCGTCGACTTCTGA
AA sequence Show only first row Show all	>Lus10009955 pacid=23150116 polypeptide=Lus10009955 locus=Lus10009955.g ID=Lus10009955.BGIv1.0 annot-version=v1.0 MSSGEGQTVCVTGASGYIASWIVKLLLSRGYTVKASVRDPNDPKKTEHLRALDGASDRLLLFKANLLEEGSFDSGVEGCVAVFHTASPFYHDVKDPQLEL IDPALKGTLNVLNSCAKTPSVKRVVLTSSIAAVAYNGKPRTPEVVVDETWFSNPDFCRESKLWYVVSKTLAEDAAWKFAKEKGMDLVAINPAMVIGPLLQ PTLNTSAAAVLSIMKGAQTFPNATFGWVHVKDVAEAHIKAFEIPSANGRYCLVETVAHYSEVVKTLKKLYPSVQLPEKCADDKPSVPTYQVSKEKAKTLG IEFIPLEVSLKETVDSLKEKGFVDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51410			NAD(P)-binding Rossmann-fold s...		Lus10009955 [exp]	0	1
AT1G78440		ATGA2OX1	Arabidopsis thaliana gibberell...		Lus10038498 [exp]	2.0	0.6872
AT5G11720			Glycosyl hydrolases family 31 ...		Lus10038408 [exp]	32.0	0.5791
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10022732 [exp]	55.9	0.5048
AT5G01880			RING/U-box superfamily protein...		Lus10025228 [exp]	59.5	0.5402
AT4G37440			unknown protein		Lus10011519 [exp]	67.6	0.4873
AT1G71960		ATABCG25, ABCG2...	Arabidopsis thaliana ATP-bindi...		Lus10006046 [exp]	134.1	0.4594
AT5G57550		XTR3, XTH25, EX...	xyloglucan endotransglycosylas...		Lus10012834 [exp]	137.7	0.4918
AT5G67420	AS2	ASL39, LBD37	ASYMMETRIC LEAVES2-LIKE 39, LO...		Lus10018697 [exp]	230.1	0.4530

Compare expression of checked genes

Lus10009955 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.