Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12470 456 / 1e-160 Protein of unknown function (DUF3411) (.1) AT2G40400 189 / 1e-53 Protein of unknown function (DUF399 and DUF3411) (.1), Protein of unknown function (DUF399 and DUF3411) (.2) AT3G56140 186 / 2e-52 Protein of unknown function (DUF399 and DUF3411) (.1) AT5G22790 123 / 4e-31 RER1 reticulata-related 1 (.1) AT2G37860 122 / 9e-31 LCD1 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) AT3G08640 99 / 7e-23 Protein of unknown function (DUF3411) (.1) AT5G24690 63 / 1e-10 Protein of unknown function (DUF3411) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003180 [exp] 611 / 0 AT5G12470 457 / 6e-161 Protein of unknown function (DUF3411) (.1) Lus10016379 [exp] 446 / 1e-156 AT5G12470 451 / 1e-158 Protein of unknown function (DUF3411) (.1) Lus10019744 [exp] 444 / 3e-156 AT5G12470 452 / 1e-159 Protein of unknown function (DUF3411) (.1) Lus10009845 [exp] 192 / 9e-55 AT3G56140 879 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Lus10040960 [exp] 191 / 3e-54 AT3G56140 879 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Lus10010224 [exp] 188 / 4e-53 AT3G56140 909 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Lus10017422 [exp] 115 / 4e-29 AT3G56140 290 / 3e-92 Protein of unknown function (DUF399 and DUF3411) (.1) Lus10043364 [exp] 99 / 1e-22 AT5G22790 428 / 1e-148 reticulata-related 1 (.1) Lus10024346 [exp] 94 / 1e-21 AT2G37860 415 / 7e-146 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G256300 [exp] 489 / 2e-173 AT5G12470 443 / 3e-155 Protein of unknown function (DUF3411) (.1) Potri.009G051800 [exp] 476 / 2e-168 AT5G12470 467 / 1e-164 Protein of unknown function (DUF3411) (.1) Potri.001G262200 [exp] 455 / 4e-160 AT5G12470 471 / 1e-166 Protein of unknown function (DUF3411) (.1) Potri.008G074300 [exp] 190 / 7e-54 AT3G56140 968 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Potri.016G103100 [exp] 126 / 3e-32 AT2G37860 510 / 2e-180 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) Potri.009G150400 [exp] 124 / 8e-32 AT5G22790 518 / 0.0 reticulata-related 1 (.1) Potri.016G140700 [exp] 102 / 3e-24 AT3G08640 357 / 5e-123 Protein of unknown function (DUF3411) (.1) Potri.006G111300 [exp] 100 / 3e-23 AT3G08640 349 / 8e-120 Protein of unknown function (DUF3411) (.1) Potri.001G210500 [exp] 62 / 4e-10 AT5G24690 602 / 0.0 Protein of unknown function (DUF3411) (.1) Potri.003G019600 [exp] 60 / 2e-09 AT5G24690 599 / 0.0 Protein of unknown function (DUF3411) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11891 [flax] [poplar] RETICULATA-like Protein RETICULATA-related
Representative CDS sequence Show only first row Show all	>Lus10009956 pacid=23150126 polypeptide=Lus10009956 locus=Lus10009956.g ID=Lus10009956.BGIv1.0 annot-version=v1.0 ATGGCAATGGCCTCCTGCTTCCTCGCCGCTGGTTCCCTCTCCGCCACCTCCTCCACTGCCGTCAAGCTCAACCTTCCTCCGCTCACATCATCTTCTCCTT CCCCATTCCGCAGCCTCCGCCTCTCCTCCTCATCTTCCTCTGTTTCCATTCGCCGTATCAATCAACAACGCCTACTTCCTCTCTTCGTCCCTTCAGCCGC ATCCTACGGCGGCGGCGATGATGACGGCGGGATCAATCGCTTCGGCGGAGGCGGAGGAGATGATGATGGTGAGGGGAAGGACGGAGATGAGAATGCAGGG GATAAGAATCGAGAAGAGGCAATGTTAGTGTTGGCTCAAGTCGAGAGGTCGATCGACAGTTTGCCCAAGGACTTGGCGGCTGCGATCTTGGACGGGAGGA TTCCTGGGGTCGTGGTTTCTAGGTTTTTGGAGCTGGAGAAGTCAGGGTTTATGCGGTGGCTGCTTCAGTTCGGCGGGTTTAAGGAGCGGTTGTTGGCCGA TGATCTTTTCTTGGCTAAAATCGGGATCGAATGCGGCGTCGGCCTCTTCACCAAGACTGCTGCAGAATACGAGAAGCGCAAAGAGAATTTCTCAAAGGAG CTGGAATTTGTGTTCGCTGATGTGGTTATGGCCATATGTGCAGATTTCATGCTGGTGTTCCTTCCTGCGCCTACCGTGTCTCTCCGGCCAGCTCTTGCAG GAACTGCTGGACCAATTGCTAGGTTCTTCCATGGTTGCCCTGACAATGCTTTCCAGGTTGCTATAGCTGGAACTTCATATTCGTTCGTGCAGCGACTAGG CTCAATTCTGCGTAACGGGACAAAGCTCTTTGCTGTTGGCACCGCGTCTTCCCTGATTGGAACGTCAGTGATAAATGCGCTGATCAAGGCAAAGAAAGCT GTGGATAATTCTGGTGAAGTTGAAACTTTACCTATACTGTCCACGAGTGTTGGATATGGTGTCTACATGGCGGTTTCTAGCAATCTGAGGTATCAAATAT TGGCTGGTGTTATTGAACAAAGGATCTTGGAGCCCGTACTCCATCAACACAAGCTCATGCTCAGCACACTCTGTTTCGCTGTCCGAACAGGCAACACTTA CTTGGGCTCACTCTTGTGGGTGGATTATGCTCGGATGGTGGGGCTTCAAAAATCTCCAGAAGAGCATAAGGAACTGGCTTAG
AA sequence Show only first row Show all	>Lus10009956 pacid=23150126 polypeptide=Lus10009956 locus=Lus10009956.g ID=Lus10009956.BGIv1.0 annot-version=v1.0 MAMASCFLAAGSLSATSSTAVKLNLPPLTSSSPSPFRSLRLSSSSSSVSIRRINQQRLLPLFVPSAASYGGGDDDGGINRFGGGGGDDDGEGKDGDENAG DKNREEAMLVLAQVERSIDSLPKDLAAAILDGRIPGVVVSRFLELEKSGFMRWLLQFGGFKERLLADDLFLAKIGIECGVGLFTKTAAEYEKRKENFSKE LEFVFADVVMAICADFMLVFLPAPTVSLRPALAGTAGPIARFFHGCPDNAFQVAIAGTSYSFVQRLGSILRNGTKLFAVGTASSLIGTSVINALIKAKKA VDNSGEVETLPILSTSVGYGVYMAVSSNLRYQILAGVIEQRILEPVLHQHKLMLSTLCFAVRTGNTYLGSLLWVDYARMVGLQKSPEEHKELA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12470			Protein of unknown function (D...		Lus10009956 [exp]	0	1
AT5G54960		PDC2	pyruvate decarboxylase-2 (.1)		Lus10002217 [exp]	1.0	0.8883
AT4G10265			Wound-responsive family protei...		Lus10039761 [exp]	2.4	0.8778
AT3G54690		SETH3	Sugar isomerase (SIS) family p...		Lus10003549 [exp]	2.8	0.8629
AT1G67100	AS2	LBD40	LOB domain-containing protein ...		Lus10028469 [exp]	3.5	0.8699
AT3G54690		SETH3	Sugar isomerase (SIS) family p...		Lus10033902 [exp]	3.5	0.8555
AT3G23150		ETR2	ethylene response 2, Signal tr...		Lus10021212 [exp]	3.9	0.8608
AT3G53390			Transducin/WD40 repeat-like su...		Lus10026500 [exp]	4.0	0.8408
AT4G10265			Wound-responsive family protei...		Lus10039754 [exp]	6.5	0.8443
AT5G11000			Plant protein of unknown funct...		Lus10005342 [exp]	7.6	0.7858
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10025142 [exp]	11.3	0.8044

Compare expression of checked genes

Lus10009956 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.