Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12460 422 / 7e-145 Protein of unknown function (DUF604) (.1) AT2G37730 317 / 1e-102 Protein of unknown function (DUF604) (.1) AT4G11350 281 / 7e-89 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) AT4G23490 274 / 8e-86 Protein of unknown function (DUF604) (.1) AT5G41460 273 / 2e-85 Protein of unknown function (DUF604) (.1) AT1G01570 271 / 2e-85 Protein of unknown function (DUF604) (.1) AT3G11420 267 / 2e-83 Protein of unknown function (DUF604) (.1) AT4G15240 261 / 3e-81 Protein of unknown function (DUF604) (.1) AT4G00300 266 / 1e-80 fringe-related protein (.1.2) AT1G05280 247 / 2e-76 Protein of unknown function (DUF604) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027356 [exp] 446 / 1e-153 AT5G12460 398 / 2e-135 Protein of unknown function (DUF604) (.1) Lus10003179 [exp] 297 / 5e-99 AT5G12460 222 / 7e-71 Protein of unknown function (DUF604) (.1) Lus10027153 [exp] 283 / 6e-90 AT1G05280 479 / 4e-167 Protein of unknown function (DUF604) (.1) Lus10032293 [exp] 277 / 4e-87 AT4G23490 740 / 0.0 Protein of unknown function (DUF604) (.1) Lus10039693 [exp] 270 / 2e-85 AT4G15240 495 / 1e-173 Protein of unknown function (DUF604) (.1) Lus10039692 [exp] 266 / 1e-83 AT1G05280 476 / 3e-166 Protein of unknown function (DUF604) (.1) Lus10027152 [exp] 265 / 4e-83 AT4G15240 521 / 0.0 Protein of unknown function (DUF604) (.1) Lus10017514 [exp] 263 / 2e-81 AT5G41460 759 / 0.0 Protein of unknown function (DUF604) (.1) Lus10018123 [exp] 256 / 7e-79 AT5G41460 589 / 0.0 Protein of unknown function (DUF604) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G051600 [exp] 577 / 0 AT5G12460 459 / 4e-159 Protein of unknown function (DUF604) (.1) Potri.001G256200 [exp] 508 / 6e-178 AT5G12460 444 / 2e-153 Protein of unknown function (DUF604) (.1) Potri.016G101200 [exp] 285 / 2e-90 AT2G37730 618 / 0.0 Protein of unknown function (DUF604) (.1) Potri.006G089150 [exp] 285 / 3e-90 AT2G37730 626 / 0.0 Protein of unknown function (DUF604) (.1) Potri.009G026300 [exp] 284 / 4e-90 AT1G07850 637 / 0.0 Protein of unknown function (DUF604) (.1) Potri.008G058900 [exp] 282 / 2e-89 AT3G11420 493 / 1e-171 Protein of unknown function (DUF604) (.1) Potri.017G039600 [exp] 280 / 4e-89 AT1G05280 479 / 3e-167 Protein of unknown function (DUF604) (.1) Potri.010G199900 [exp] 273 / 5e-86 AT3G11420 481 / 7e-167 Protein of unknown function (DUF604) (.1) Potri.017G039500 [exp] 265 / 1e-82 AT4G15240 491 / 9e-171 Protein of unknown function (DUF604) (.1) Potri.003G131400 [exp] 265 / 1e-82 AT5G41460 732 / 0.0 Protein of unknown function (DUF604) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF04646 [flax] [poplar] DUF604 Protein of unknown function, DUF604
Representative CDS sequence Show only first row Show all	>Lus10009957 pacid=23150134 polypeptide=Lus10009957 locus=Lus10009957.g ID=Lus10009957.BGIv1.0 annot-version=v1.0 ATGAAGCAAAAGTTTCAACATTTTCCCCTTGGAAACCTATGGAAATCCATACTCCTTTCATGCCTATTCCTCTTCTTGTTCTACACCTTCGCCGTACACT ACCAGAATGCTAACATACTTGCTACCATTCCCTTGCTTCCTCTTCCACACAAATGGAGTTCTAGTACCAATAGAGCATCAATAACTCGTCCCGCCGACGA GGTCGATTTTACGCCAACAGACTTGAGGCACGTGGAATTCGTTGTAATCGGGTCCTTACACACCTGGAGGTGGAGAAAGGCCTACATAGAGTCATGGTGG AGACCAAATGTAACGAAAGGTTTCTTATTCATGGACAAAGAACCAACGTCACAGTTCCTACCATGGCCTAAAACATCTCCACCATATAGAGTCAGCACCG ACTACACCGGAATAAAGGTCTACACAAAGCTTGCGAACCCACCTCAAATTCGCATGGTTCGAGCCATCGTCGACATGTATAGACAAGCGGACACCACCAA CCACAAGGGGCTGAGGTGGTTCGTTATGTGCGACGACGACACGTTATTTTTGGTAGACAACTTGATCGGTGTCCTGAACAAGTTCGATCACACAAGGTAT CAGTACATTGGAGGGACTTCAGAGAGTATAAAGTCGAATGCCGATTTCTCCTTCGAGATGGGGTTTGGTGGAGCTGGCTATGCTTTGAGCTATCCATTGG TTGAGGCCTTGTCAAGTAAGATTGATGATTGCATTGAGAGATACAATTATGTGTTCGTTAGTGATGCTTTGGTCCAGTCCTGTTTGGCTGATCTTGGTGT TGCTGTTACCCATCAAAAGGGGTTTCACCAGATTGACCTCCATGGCGACATCTCAGGCATCCTATCAGCACATCCACAATCCCCCTTAGTAAGCCTCCAC CATTTCGACCACATAGACCCAATCTTCCCCTCCATGGACCGTCTTCAAGCAATCCAACACCTCATGAAGGCTGCCGAAATCGACCAATCTCGCACCTCTC AGCAGACAATCTGCTACCAGAGACAGAGCAACTGGTCTATCTCAGTGTCCTGGGGATACTCCGCCTACATTTACGAGAACATCATCCCCAGAAGCTCGCT GATCAAGCCGTTCGTGACATTTAAGCCGTGGCATGCTGCAAAGTACCCGGCTTTCATGTTCAATACGAGGTGGCTCGGTTCTAATAATACTTGTGAGTCC CCTCATGTGTTCTTCTTCAAGTCTGTTGTTGTTGAGAAGAAGAATGTGTTTACAGCGGATGATCGAGTTGTTACTACTACTTATGCTCGAAAATCGGGCC GTGACTTGGCGCCTTGTTCGATGGCTGGGAACCATTCTGCTAATCATGTGGATTTGATTCAGGTCTCTTCTCCAGCAGCAAGTCCTAAGATGGATGGTGT AATGGAATGTTGTGATGTGGATTACAAGGCTGGCAGCAGTATCATGGATATCAGGATTAGGAGTTGCCTGAAAGATGAAGTCATCGCCTAG
AA sequence Show only first row Show all	>Lus10009957 pacid=23150134 polypeptide=Lus10009957 locus=Lus10009957.g ID=Lus10009957.BGIv1.0 annot-version=v1.0 MKQKFQHFPLGNLWKSILLSCLFLFLFYTFAVHYQNANILATIPLLPLPHKWSSSTNRASITRPADEVDFTPTDLRHVEFVVIGSLHTWRWRKAYIESWW RPNVTKGFLFMDKEPTSQFLPWPKTSPPYRVSTDYTGIKVYTKLANPPQIRMVRAIVDMYRQADTTNHKGLRWFVMCDDDTLFLVDNLIGVLNKFDHTRY QYIGGTSESIKSNADFSFEMGFGGAGYALSYPLVEALSSKIDDCIERYNYVFVSDALVQSCLADLGVAVTHQKGFHQIDLHGDISGILSAHPQSPLVSLH HFDHIDPIFPSMDRLQAIQHLMKAAEIDQSRTSQQTICYQRQSNWSISVSWGYSAYIYENIIPRSSLIKPFVTFKPWHAAKYPAFMFNTRWLGSNNTCES PHVFFFKSVVVEKKNVFTADDRVVTTTYARKSGRDLAPCSMAGNHSANHVDLIQVSSPAASPKMDGVMECCDVDYKAGSSIMDIRIRSCLKDEVIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12460			Protein of unknown function (D...		Lus10009957 [exp]	0	1
AT5G24130			unknown protein		Lus10001061 [exp]	4.0	0.7285
AT4G37840		HKL3	hexokinase-like 3 (.1)		Lus10011584 [exp]	6.3	0.7260
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10012859 [exp]	16.7	0.6665
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Lus10017288 [exp]	19.7	0.7004
AT3G25900		HMT-1, ATHMT-1	Homocysteine S-methyltransfera...		Lus10034320 [exp]	21.8	0.6309
AT5G13150		ATEXO70C1	exocyst subunit exo70 family p...		Lus10003142 [exp]	24.9	0.6946
AT2G23945			Eukaryotic aspartyl protease f...		Lus10023451 [exp]	25.6	0.6812
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10031033 [exp]	26.6	0.6505
AT4G28850		ATXTH26, XTH26,...	xyloglucan endotransglucosylas...		Lus10034957 [exp]	27.7	0.6505
AT1G70780			unknown protein		Lus10039287 [exp]	28.7	0.6505

Compare expression of checked genes

Lus10009957 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.