Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21070 677 / 0 NADK1, ATNADK-1 NAD kinase 1 (.1.2) AT1G21640 241 / 6e-70 ATNADK2, NADK2, ATNADK-2 NAD kinase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003178 [exp] 979 / 0 AT3G21070 768 / 0.0 NAD kinase 1 (.1.2) Lus10000856 [exp] 241 / 4e-70 AT1G21640 1205 / 0.0 NAD kinase 2 (.1.2) Lus10029717 [exp] 234 / 2e-67 AT1G21640 1154 / 0.0 NAD kinase 2 (.1.2) Lus10028677 [exp] 216 / 2e-60 AT1G21640 1112 / 0.0 NAD kinase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G051500 [exp] 747 / 0 AT3G21070 754 / 0.0 NAD kinase 1 (.1.2) Potri.001G256100 [exp] 744 / 0 AT3G21070 774 / 0.0 NAD kinase 1 (.1.2) Potri.002G078700 [exp] 239 / 3e-69 AT1G21640 1191 / 0.0 NAD kinase 2 (.1.2) Potri.005G182600 [exp] 237 / 1e-68 AT1G21640 699 / 0.0 NAD kinase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0240 [flax] [poplar] PFK PF01513 [flax] [poplar] NAD_kinase ATP-NAD kinase
Representative CDS sequence Show only first row Show all	>Lus10009958 pacid=23150127 polypeptide=Lus10009958 locus=Lus10009958.g ID=Lus10009958.BGIv1.0 annot-version=v1.0 ATGGCTCCCAGCCAGCTCAATTCCACTGATGCTTCTGGAGATGTCAACTGTCCAAGCCCCCGTCCGGAGAATGGGGTCATTGATAATGGTGATTCACTGT CTATATTTCATTCCGAGAAGGCGGTGCAGGAGCTTCTTCAACAGACTCCACTCCAGGGAAACGATGATCATCTTGTAGAGTTTTCTGAGGCTCTAAGAAC TGTTGCCAAGGCGCTGAGGCGAGCAGCTGAAGGAAAGGCTTCTGCTCAGGCTGAGGCTGTGGAATGGAAGCGTCGATATGAACTGGAGATGGCTCGGACT CGTAAAGAACCATCTCACAGGGAGCCGGATAATGAAATTGATGATCAAAGGATAGAGGTCCCAGCCATCGTATCTTTGCCAGGAAATCAGGTAAATGGAC TATCTGAAGATTTCTTGGTAAATGGTATTTGCTCTCACGAAATTCTCCAGGATGGAGAGGCTGGCCCTGATCCAAAGGCTGTTCGAAACAGAATGATGCG AAAGGCATCTTTTAAACTTTCCTGGTGGTGCAAGGGTGACAATGGTGATCAGCACAAACATGATATTGTATCATTTGAAAAAGGAAACATCACAACTGCA GGACGCACCAGTAAACAGATTTCTTTAAAGTGGGAGTCCAAGCCGCAGACTGTGCTTATAATGAACAAACCAAATTCAGTTTCTGTTCGGATTCTATGTG CACAAATGGTCAGATGGTTGAAAGAACATCAAAAGGTGAATATTTTTGTGGAACCACGTGTGAAGGCTGAACTTCTAACCGAGTCGTCTTATTTCAAGTT TGTGCAGACTTGGAAAGATGCTGACGAATTAGCTGTTTACTCTGCAGACACTGAGATTTCACTCCTTCACACAAAGATGGACCTTGTAGTGACTCTCGGC GGTGATGGTACAGTTCTTTGGGCTGCATCAATGTTCAAAGGGCCGGTTCCTCCCATCGTCCCGTTTTCTTTAGGTATAAAATTGCGGCACCGACTGCAGT GCTATGTTATTAGAGATGCAGCTAAAAATGAGTATGAAACCGAGGAGCCAATACTCGTGTTGAACGAGGTAACAATTGATCGTGGGATATCGTCGTACCT CACGAACTTGGAGTGTTACTGTGACAACTCTTTTGTCACATGTGTCCAAGGAGACGGTTTGATTCTATCAACTACATCTGGCAGCACCGCATACTCTTTA GCAGCTGGAGGATCCATGGTTCATCCACAGCATCCGAAATTGCAGGTGCCTGGGATCCTCTTCACGCCAATTTGTCCGCATTCCTTGTCATTTAGGCCTC TGATACTTCCCGAGAACGTCACGATACGAGTCCAAGTTCCTTTCAATAGCAGAAGCCCTGCTTGGGCATCATTCGACGGGAAAGACAGGAAACAGTTGGA AGCCGGTGATGCACTTGTGTGCAGCATGGCGCCCTGGCCAGTGCCAACAGCATGTTCGGTGGATTCTACGGGTGATTTCCTGCGCAGCATCCACGAGGGT CTTCATTGGAATCTGAGAAAGACTCAATCTTTTGATGGCCCTCGTGAATCGTGA
AA sequence Show only first row Show all	>Lus10009958 pacid=23150127 polypeptide=Lus10009958 locus=Lus10009958.g ID=Lus10009958.BGIv1.0 annot-version=v1.0 MAPSQLNSTDASGDVNCPSPRPENGVIDNGDSLSIFHSEKAVQELLQQTPLQGNDDHLVEFSEALRTVAKALRRAAEGKASAQAEAVEWKRRYELEMART RKEPSHREPDNEIDDQRIEVPAIVSLPGNQVNGLSEDFLVNGICSHEILQDGEAGPDPKAVRNRMMRKASFKLSWWCKGDNGDQHKHDIVSFEKGNITTA GRTSKQISLKWESKPQTVLIMNKPNSVSVRILCAQMVRWLKEHQKVNIFVEPRVKAELLTESSYFKFVQTWKDADELAVYSADTEISLLHTKMDLVVTLG GDGTVLWAASMFKGPVPPIVPFSLGIKLRHRLQCYVIRDAAKNEYETEEPILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSL AAGGSMVHPQHPKLQVPGILFTPICPHSLSFRPLILPENVTIRVQVPFNSRSPAWASFDGKDRKQLEAGDALVCSMAPWPVPTACSVDSTGDFLRSIHEG LHWNLRKTQSFDGPRES

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21070		NADK1, ATNADK-1	NAD kinase 1 (.1.2)		Lus10009958 [exp]	0	1
AT3G21070		NADK1, ATNADK-1	NAD kinase 1 (.1.2)		Lus10003178 [exp]	1.4	0.8704
AT3G09830			Protein kinase superfamily pro...		Lus10038711 [exp]	3.0	0.8527
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10042994 [exp]	4.0	0.8579
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10037733 [exp]	5.9	0.8452
AT1G14740			Protein of unknown function (D...		Lus10013248 [exp]	10.5	0.8232
					Lus10000768 [exp]	11.2	0.7970
AT3G27820		ATMDAR4	monodehydroascorbate reductase...		Lus10013079 [exp]	13.4	0.8432
AT1G34750			Protein phosphatase 2C family ...		Lus10033453 [exp]	16.0	0.8523
AT4G09760			Protein kinase superfamily pro...		Lus10028728 [exp]	18.2	0.8038
AT1G53050			Protein kinase superfamily pro...		Lus10033684 [exp]	18.2	0.8155

Compare expression of checked genes

Lus10009958 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.