Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21090 845 / 0 ABCG15 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) AT1G51460 802 / 0 ABCG13 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) AT1G51500 799 / 0 AtABCG12, WBC12, ABCG12, D3, CER5, ATWBC12 ECERIFERUM 5, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX 12, ATP-binding cassette G12, ABC-2 type transporter family protein (.1) AT1G17840 583 / 0 AtABCG11, WBC11, DSO, ABCG11 ,COF1, ATWBC11 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) AT2G28070 353 / 2e-111 ABCG3 ATP-binding cassette G3, ABC-2 type transporter family protein (.1) AT2G01320 274 / 1e-81 ABCG7 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4) AT3G52310 245 / 1e-70 ABCG27 ATP-binding cassette G27, ABC-2 type transporter family protein (.1) AT1G31770 236 / 2e-68 ABCG14 ATP-binding cassette G14, ATP-binding cassette 14 (.1) AT5G06530 234 / 8e-67 AtABCG22, ABCG22 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) AT2G39350 229 / 5e-65 ABCG1 ATP-binding cassette G1, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027354 [exp] 937 / 0 AT3G21090 868 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009960 [exp] 888 / 0 AT3G21090 855 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10000339 [exp] 877 / 0 AT1G51460 837 / 0.0 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) Lus10009961 [exp] 779 / 0 AT3G21090 971 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10027353 [exp] 765 / 0 AT3G21090 661 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10031063 [exp] 561 / 0 AT3G21090 659 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10035445 [exp] 557 / 0 AT3G21090 667 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10040644 [exp] 554 / 0 AT1G17840 1120 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10023154 [exp] 479 / 3e-160 AT1G17840 613 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G051300 [exp] 936 / 0 AT3G21090 943 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.001G255900 [exp] 914 / 0 AT3G21090 929 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.009G051200 [exp] 865 / 0 AT3G21090 1008 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.001G255800 [exp] 856 / 0 AT3G21090 1038 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.016G056600 [exp] 700 / 0 AT3G21090 744 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.016G056700 [exp] 692 / 0 AT3G21090 739 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.017G155300 [exp] 620 / 0 AT1G17840 1174 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.018G152600 [exp] 612 / 0 AT1G17840 1152 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.005G073100 [exp] 541 / 0 AT1G17840 661 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.005G073050 [exp] 540 / 0 AT1G17840 659 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10009959 pacid=23150103 polypeptide=Lus10009959 locus=Lus10009959.g ID=Lus10009959.BGIv1.0 annot-version=v1.0 ATGGAGACTACGCAAGCAAGCACTGGTAGTAGTGGTGGTGAAGATCACGATATTGAAACAGGTGCATCAAATGGAAAAGAAGAACCAGAGGCTACGTACC TTGTCTGGGAGGATATAACTGTGCTTGTTCCTCATTTGGGCAATGGACCGATCAAAAGGTTGATTAATAGGATTAGTGGATATGCTGAGCCTGGTAAGAT CAAGGCAATCATCGACCCCTCGGGTTCCGGGAAAACAACTCTTCTAGATGCATTAACAGGTCGACTACCGAGAAATGTAGCAATGACTGGGAAGATCCTA GTAAATGGACAGAAGAAGAAACTCGACTGTTGCGAAATTGGTTATGTAACACAAGAAAACACACTTTTGGGAACACTCACTGTGCGAGAAACAGTAACAT ACTCGGCTCATTTGAGGCTTCCAAGTTCTATGACCGCTAAAGAAATGAATGATACTGCACAAGAAACTATAACATCAATGGGTCTCCAAGATTGCGCAGA TCGTTTACTTGGGAATTGGCATTTAAGAGGGATAAGTAGTGGGGAGAAGAAAAGACTCAGCATTGCACTAGAAATCCTCACCATGCCCCAGCTTTTAGTT CTAGATGAACCCACCACTGGCCTCGACAGTGCCTCCGCTTTCTTTGTTGTCCAAACATTAAGAAACATTGCTCTAGATGGAAGAACTGTCATAACTTCCA TCCACCAGCCAAGCAGTGAAGTCTTTGCACTTTTCGACGACCTTTGCTTGTTATCTGGTGGTGAGGCTATCTATTCTGGAGAAGCAAAAATGGCTCTCAA GTTTTTTGCTGAAGCTGGATTCCCGTCTCCAATTCAAAGGAATCCCTCTGATCATTTCCTACGCTGCATTAATTCAGACTTCGACCAGATCAAAATGTCT TTGAAACAGAAGTACATCGAAGAAACATCACGGTATTTGACAGACATCATGCCCACAGCAGAGATCAAGGCAAAGCTACTCGAGAAATATAGGCTGTCCG ACAATGCGGTCAAGGAAAGAGCAATGATTATGAAACTGTCGGCAATCAAAGAAACTGAAATAAAAAAGAAGTTCAAGAGACAAGCAAATTGGTGGAAGCA ACTCTGCACATTGACACGAAGATCGTCTGTCAATATGTGGAGAGACTGGGGATACTATAGGGTGAGAATAGGAGTCTACATAGCCTTGTCATTATCTGTT GGTACCATCTTTTTCGATGTCGGAAGTAGCCATACATCAGTCTATGCAAGAGGAGCTTGTGGAGCGTTTATTTCTGGCTTTATGACATTTATGTCCATTG GAGGTTTCCCTTCATTCATTGAGGAATTGAAGGTCTTCTATAAAGAAAGATCGAAAGGACATTACGGGGTTGGGGTTTACATCATCTCGAACTTTCTATC TTCCTTCCCTTACTTGACTCTCATGTCACTCTCGACAACAAGTATTACCTATTACATGGTGAAATTTCGAACAGGATTTTCACGTTTTGTTTACATATGC CTTCTTCTGATGAGTGGTATAGCATCCGTTGAAAGCTGCATGATGACCATAGCTGCACTAGTTCCCAACTTCTTGATGGGAGTTATCATCGGAGCAGGAT ACGTAGGAGTACTAATGATAACTGCAGGATACTTCCGTTTTTTCCCTGATCTTCCTAAGGTTTTCTGGCGTTACCCAATTTCTTATATGAACTACGGGGC GTGGGCACTGCAGGGAGCATACAAGAATGACATGATTGGGCTGGAAATAGAGCCTCTGATACCTGGTGGTCTGAAACTGAGTGGTGAGGCTTTTCTCACA AGCGTGCTAGGCATTAACATTGAGTATTCAAAATGGTGGGACTTAGCCGCTGTTGTAGCCACCCTCGTAGCTTTCCGACTCATCTTCTATGTCATTCTCA AGTTGAAGGAAAGAACTATACAAATATTAAGGGAGCTTTACGCCAAAAGAAGTCTGCACCAGCTGAAGAAGAGGCCATCCTTTAGAAAGAACTCACTGTT TCCTTCGAAGAGACATCAACCGATCCATTCTTTGACTTCTCAAGAAGGTCTAGACTCTCCCATCCACCAGCAACATGGTCAAGAAACAATCAACAACGGC ATAACCTCTTGCACGGCGAAATGA
AA sequence Show only first row Show all	>Lus10009959 pacid=23150103 polypeptide=Lus10009959 locus=Lus10009959.g ID=Lus10009959.BGIv1.0 annot-version=v1.0 METTQASTGSSGGEDHDIETGASNGKEEPEATYLVWEDITVLVPHLGNGPIKRLINRISGYAEPGKIKAIIDPSGSGKTTLLDALTGRLPRNVAMTGKIL VNGQKKKLDCCEIGYVTQENTLLGTLTVRETVTYSAHLRLPSSMTAKEMNDTAQETITSMGLQDCADRLLGNWHLRGISSGEKKRLSIALEILTMPQLLV LDEPTTGLDSASAFFVVQTLRNIALDGRTVITSIHQPSSEVFALFDDLCLLSGGEAIYSGEAKMALKFFAEAGFPSPIQRNPSDHFLRCINSDFDQIKMS LKQKYIEETSRYLTDIMPTAEIKAKLLEKYRLSDNAVKERAMIMKLSAIKETEIKKKFKRQANWWKQLCTLTRRSSVNMWRDWGYYRVRIGVYIALSLSV GTIFFDVGSSHTSVYARGACGAFISGFMTFMSIGGFPSFIEELKVFYKERSKGHYGVGVYIISNFLSSFPYLTLMSLSTTSITYYMVKFRTGFSRFVYIC LLLMSGIASVESCMMTIAALVPNFLMGVIIGAGYVGVLMITAGYFRFFPDLPKVFWRYPISYMNYGAWALQGAYKNDMIGLEIEPLIPGGLKLSGEAFLT SVLGINIEYSKWWDLAAVVATLVAFRLIFYVILKLKERTIQILRELYAKRSLHQLKKRPSFRKNSLFPSKRHQPIHSLTSQEGLDSPIHQQHGQETINNG ITSCTAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10009959 [exp]	0	1
AT2G18300	bHLH	bHLH064, HBI1	basic helix-loop-helix (bHLH) ...		Lus10026008 [exp]	1.7	0.9727
AT2G21720			Plant protein of unknown funct...		Lus10010668 [exp]	2.6	0.9409
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Lus10002421 [exp]	4.0	0.9501
AT5G18030			SAUR-like auxin-responsive pro...		Lus10027317 [exp]	4.2	0.9492
AT2G44450		BGLU15	beta glucosidase 15 (.1)		Lus10030515 [exp]	5.3	0.9468
AT2G21140		ATPRP2	proline-rich protein 2 (.1)		Lus10042392 [exp]	5.7	0.9392
AT1G27950		LTPG1	glycosylphosphatidylinositol-a...		Lus10006413 [exp]	6.3	0.9464
					Lus10041665 [exp]	6.5	0.9160
AT5G23160			unknown protein		Lus10013437 [exp]	6.5	0.9422
AT3G12620			Protein phosphatase 2C family ...		Lus10019893 [exp]	8.2	0.9096

Compare expression of checked genes

Lus10009959 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.