Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21090 838 / 0 ABCG15 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) AT1G51460 806 / 0 ABCG13 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) AT1G51500 786 / 0 AtABCG12, WBC12, ABCG12, D3, CER5, ATWBC12 ECERIFERUM 5, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX 12, ATP-binding cassette G12, ABC-2 type transporter family protein (.1) AT1G17840 602 / 0 AtABCG11, WBC11, DSO, ABCG11 ,COF1, ATWBC11 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) AT2G28070 333 / 3e-104 ABCG3 ATP-binding cassette G3, ABC-2 type transporter family protein (.1) AT2G01320 251 / 2e-73 ABCG7 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4) AT5G06530 238 / 6e-69 AtABCG22, ABCG22 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) AT3G52310 232 / 3e-66 ABCG27 ATP-binding cassette G27, ABC-2 type transporter family protein (.1) AT3G55090 227 / 1e-64 ABCG16 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) AT2G39350 223 / 3e-63 ABCG1 ATP-binding cassette G1, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000339 [exp] 1169 / 0 AT1G51460 837 / 0.0 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) Lus10027354 [exp] 1050 / 0 AT3G21090 868 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009959 [exp] 919 / 0 AT3G21090 860 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10027353 [exp] 812 / 0 AT3G21090 661 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009961 [exp] 761 / 0 AT3G21090 971 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10031063 [exp] 577 / 0 AT3G21090 659 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10035445 [exp] 569 / 0 AT3G21090 667 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10040644 [exp] 559 / 0 AT1G17840 1120 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10018268 [exp] 465 / 3e-158 AT1G17840 849 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G051300 [exp] 949 / 0 AT3G21090 943 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.001G255900 [exp] 912 / 0 AT3G21090 929 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.009G051200 [exp] 858 / 0 AT3G21090 1008 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.001G255800 [exp] 857 / 0 AT3G21090 1038 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.016G056600 [exp] 684 / 0 AT3G21090 744 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.016G056700 [exp] 666 / 0 AT3G21090 739 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.017G155300 [exp] 630 / 0 AT1G17840 1174 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.018G152600 [exp] 623 / 0 AT1G17840 1152 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.005G073050 [exp] 540 / 0 AT1G17840 659 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.005G073100 [exp] 539 / 0 AT1G17840 661 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10009960 pacid=23150135 polypeptide=Lus10009960 locus=Lus10009960.g ID=Lus10009960.BGIv1.0 annot-version=v1.0 ATGGAAATCGAGAAAGTTGCAGATATTGATGTGGAAGCTTGTACTAGAAGCAACCATGTTGAGAGTGGTGAATCAAAAGGCAGAGATGAAGTGGAAGCTG CTGCATACCTTGTGTGGGAAGATTTGACAGTGGTGCTACCAAATTTTGGCGATGGACCTACAAGGAGATTGCTTTATAGGCTCAATGGATTTGCTGAGCC TGGTAGGATCAAAGCTGTAATGGGTCCATCCGGCTCTGGGAAAACAACTCTTCTGGATGCATTAGCAGGTGGTTATGTAAGACAAGAAAATACTCTACTG GGAACTCTTACGGTGAGAGAAACTATCAAATACTCAGCTTGTTTGAGGCTCCCAAGCACAATGACCAAAGAACAAATTGATGAGATTGCAGAAGGAACTT TAATGGAAATGGGTCTCCAAGATTGTGCAGATCGATTTATTGGGAACTGGCATATAAGGGGAATAAGTGGTGGGGAGAAGAAAAGACTAAGCATTGCACT TGAACTTCTCACCAAGCCTCAGCTCTTATTCCTAGATGAACCTACAACCGGTCTAGACAGCGCCTCGGCTTTCTTTGTGGTTCAAACTCTCAGAAACATT GCAGTAGATGGAAGAACTGTCATAGCTTCCATTCATCAGCCAAGCAGTGAAGTTTTTGCACTTTTTGATGAACTTCATTTGCTTTCTGGTGGAGAGACTG TCTACTCAGGGGAGGCTAGAAGGGCAACAGAGTTCTTTGCTCAAGCTGGATTCCCTTGTCCGATCCGAAGAAACCCTTCTGATCATTTCCTACGTTGCAT TAATTCAGATTTCGACCAGATCACCCTGCCTTTAACAGGATCTAAAAGGGGTACTGATGAACAGCTAGAATCTTTGAAATACTTACCGACGGCAGAAATC AAGGCAATGCTAATCAAGGAATACAAGCAATCCAACTACGCAGGCAGGGAAAAAGAAAAAATCAAGGAAATCCTTGCTACTAAAGGAACAGTTTTAAAGA GAAGAATGAAACGACAAGTGACTTGGTGGAAGCAACTCTGCACATTGACACATAGATCGTTTATGAACATGTGCAGAGATTTGGGTTATTATTGGGTCAG GATAGGAATCTATATAACCTTGTCTGTCTGTGTTGGTACCATCTTTTTTGATCTGGAAAAAAGTAAGTCACTCTTGGCAAGAGGAGCCTGTGCCGGATTC ATTTCCGGGTTTATGATATTCATGTCAATTGGGGGCTTCCCTTCCTTCATTGAAGAATTGAAGGTTTTCCATGAAGAAAGACTGAACAGGCATTATGGGG TCGGGGTGTACATTCTATCAAACTTTCTCTCTTCTTTCCCTTACTTGATTCTTATGTCACTCTCCACTGCAAGTATTACCTTTTACATGGTGAAACCCCG AGGAGGTTGCTTCTCCTGTTTTGTGTTCATCTGTCTCGACCTACTAAGCAGTATTGCAGCCGTAGAGAGCTGCATGATGACTATAGCTACACTTGTTCCC AACTACTTAATGGGAATCGTTACTGGAGCCGGATATATTGGAATCCTTATGATGACTTCAGGATTCTTCCGTTTTCTGCCTGATCTTCCTAAGGTTCTGT GGCGCTACCCAATCTCTTACATCAACTTTGCTGTTTGGGGACTACAGGGATCATACAAAAACGACATGATTGGAATGGAATTTGAACCATTAATACCTGG TGGGCCGAAGGTGAAAGGCGAAGTTTTCCTGAAAGCGGTGCTTGGTGTCAACCTTGAATATTCAAAGTGGTGGGACTTAGCTGCAGTTGTGGCCCTCCTT GTAGCTTTCAGACTTCTCTTCTATGGCATCTTGAAGTTAAAGGAGAGATCTTCACCTGTGTTAAGGGAGATCTATGCCAAGAGAACGCTGCACCATCTCA TGAAGAGGTCATCTTTTAGAAAGAACTCGCCTTTTCCTTCTCAGAGGCATCAAGTCATTCATTCTCTGTCTTCTCAAGAGGGTCTATTCTCTCCAATCCA CTAG
AA sequence Show only first row Show all	>Lus10009960 pacid=23150135 polypeptide=Lus10009960 locus=Lus10009960.g ID=Lus10009960.BGIv1.0 annot-version=v1.0 MEIEKVADIDVEACTRSNHVESGESKGRDEVEAAAYLVWEDLTVVLPNFGDGPTRRLLYRLNGFAEPGRIKAVMGPSGSGKTTLLDALAGGYVRQENTLL GTLTVRETIKYSACLRLPSTMTKEQIDEIAEGTLMEMGLQDCADRFIGNWHIRGISGGEKKRLSIALELLTKPQLLFLDEPTTGLDSASAFFVVQTLRNI AVDGRTVIASIHQPSSEVFALFDELHLLSGGETVYSGEARRATEFFAQAGFPCPIRRNPSDHFLRCINSDFDQITLPLTGSKRGTDEQLESLKYLPTAEI KAMLIKEYKQSNYAGREKEKIKEILATKGTVLKRRMKRQVTWWKQLCTLTHRSFMNMCRDLGYYWVRIGIYITLSVCVGTIFFDLEKSKSLLARGACAGF ISGFMIFMSIGGFPSFIEELKVFHEERLNRHYGVGVYILSNFLSSFPYLILMSLSTASITFYMVKPRGGCFSCFVFICLDLLSSIAAVESCMMTIATLVP NYLMGIVTGAGYIGILMMTSGFFRFLPDLPKVLWRYPISYINFAVWGLQGSYKNDMIGMEFEPLIPGGPKVKGEVFLKAVLGVNLEYSKWWDLAAVVALL VAFRLLFYGILKLKERSSPVLREIYAKRTLHHLMKRSSFRKNSPFPSQRHQVIHSLSSQEGLFSPIH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10009960 [exp]	0	1
AT2G35640	Trihelix		Homeodomain-like superfamily p...		Lus10018283 [exp]	2.4	0.9775
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10039738 [exp]	5.7	0.9653
AT1G68480	C2H2ZnF	JAG	JAGGED, C2H2 and C2HC zinc fin...		Lus10041443 [exp]	5.7	0.9709
AT2G28490			RmlC-like cupins superfamily p...		Lus10011364 [exp]	6.5	0.9645
AT5G51560			Leucine-rich repeat protein ki...		Lus10031703 [exp]	6.7	0.9651
AT1G14600	GARP		Homeodomain-like superfamily p...		Lus10035093 [exp]	7.1	0.9562
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10038135 [exp]	8.1	0.9666
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10007660 [exp]	10.8	0.9572
AT2G35640	Trihelix		Homeodomain-like superfamily p...		Lus10040628 [exp]	12.0	0.9578
AT3G06520			agenet domain-containing prote...		Lus10017088 [exp]	12.0	0.9561

Compare expression of checked genes

Lus10009960 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.