Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21090 921 / 0 ABCG15 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) AT1G51500 873 / 0 AtABCG12, WBC12, ABCG12, D3, CER5, ATWBC12 ECERIFERUM 5, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX 12, ATP-binding cassette G12, ABC-2 type transporter family protein (.1) AT1G51460 765 / 0 ABCG13 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) AT1G17840 618 / 0 AtABCG11, WBC11, DSO, ABCG11 ,COF1, ATWBC11 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) AT2G28070 319 / 8e-99 ABCG3 ATP-binding cassette G3, ABC-2 type transporter family protein (.1) AT2G01320 239 / 3e-69 ABCG7 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4) AT3G52310 193 / 2e-52 ABCG27 ATP-binding cassette G27, ABC-2 type transporter family protein (.1) AT3G55100 191 / 2e-52 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) AT5G06530 191 / 7e-52 AtABCG22, ABCG22 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) AT3G55090 189 / 4e-51 ABCG16 ATP-binding cassette G16, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027354 [exp] 773 / 0 AT3G21090 868 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009959 [exp] 755 / 0 AT3G21090 860 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009960 [exp] 729 / 0 AT3G21090 855 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10000339 [exp] 710 / 0 AT1G51460 837 / 0.0 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) Lus10000338 [exp] 594 / 0 AT3G21090 532 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10040644 [exp] 563 / 0 AT1G17840 1120 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10035445 [exp] 559 / 0 AT3G21090 667 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10031063 [exp] 556 / 0 AT3G21090 659 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10023154 [exp] 476 / 7e-160 AT1G17840 613 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G051200 [exp] 1013 / 0 AT3G21090 1008 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.001G255800 [exp] 999 / 0 AT3G21090 1038 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.009G051300 [exp] 865 / 0 AT3G21090 943 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.001G255900 [exp] 839 / 0 AT3G21090 929 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.016G056700 [exp] 683 / 0 AT3G21090 739 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.016G056600 [exp] 664 / 0 AT3G21090 744 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.017G155300 [exp] 640 / 0 AT1G17840 1174 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.018G152600 [exp] 635 / 0 AT1G17840 1152 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.005G073050 [exp] 531 / 2e-180 AT1G17840 659 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.005G073100 [exp] 530 / 3e-180 AT1G17840 661 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10009961 pacid=23150114 polypeptide=Lus10009961 locus=Lus10009961.g ID=Lus10009961.BGIv1.0 annot-version=v1.0 ATGGAGATAGAATCTGGTTCCGCCGGTAACGACTATAACGGCACCGTTTCAGGAGAGAATGATGGTGATTTTCGGTCCTCGGATAACGGTCGAGGTATGC GGGGAACGTATTTGGTGTGGGAAGATCTAACAGTGGTGTTGCCAAATTTTGGTAACAAACCAACCAAGCGGTTGCTTCAAGGGCTGAGTGGGTATGCTGA GCCAGGGAGAATCATGGCTATTATGGGTCCATCAGGTTCTGGGAAATCCACACTTCTTGATTCTCTGGCAGGTAGACTATCGAAAGACGTGATAATGACT GGAACAGTTCTGTACAATGGCAAGAAGAGAAGGGTGGATAGTGGTGTTGCATATGTGACACAAGAGGATGTACTTCTAGGAACTCTTACTGTTAGAGAAA CCTTAACGTACTCAGCAATGTTGAGGCTTCCCACTAGCCATTCAAAGCAAGAAATTTCAGATGTTGTGGAAGCAACCATAGCTGAGATGGGGCTTCAAGA TTGTAGTGATACTTTAATTGGAAACTGGCATCTGAGAGGTTTAAGTGGTGGTGAGAAGAAGAGGCTAGCATTGCACTGGAGATCCTTACGAGGCCACGCC TCTTCCCGAGATGGGAGAACCATCATTTCTTCCATTCACCAGCCAAGTAGTGAAGTATTTGCTCTCTTTGATGACCTCTTCTTGCTTTCAAGCGGTGAGC CTGTTTACTTTGGTGAGGCTAAGAAAGCTGTGCAGTTCTTCGCTCAAGCTGGATTTCCATGCCCAAGTAAAAGGAACCCTTCTGATCACTTTCTACGTTG TATAAACTCGGACTTTGATGCTATTGCCGCTACTTTAAAAGGATCGCAGAAAATACATGATGCTCCTGCATCATCAGACCCCTTCATGAATATGGCAACG GCAGAGATTAAAGCAAGGCTGGTTGAGAAGTACAAAAGGTCCAACTATTCCAAAGAGACCAAAGCTCGGATTAAGGAGATATCGGCAATAGAAGGACTTG AAGTTCAACGAAGAAAAGGCAGCCAAGCGAACTGGTGGAAGCAGCTGACTACTTTGACCCGAAGATCATTCGTGAACATGTACAGAGATGTGGGATATTA CTGGGCCAGGATAGCAATCTACATTGTTGTCTCCGTTTGTGTTGGAACCATCTACTACGATGTTGGAGATGGCTACACTGCGATCTTAGCAAGGGTGGCC TGCGGTGGGTTCATCACAGGTTTCATGACTTTCATGTCCATTGGAGGCTTCCCTTCCTTCATTGAAGAAATGAAGATCTTTTACAGAGAAAGGTTAAATG GGTACTATGGGGCGGCAGTCTACATCTTGTCCAACTACCTATCTTCTTTCCCGTTCTTGGCTGTCATTGCTCTTCTTTCTGGGAACATATGCTTTCACTT GGTGAGATTTCGGCCGGGCTTTTCATACCTGGCATACTTCTGCCTCAACATTTTCGGCTGCATTTCGGTTATAGAGAGCCTGATGATGGTTGTAGCTTCA CTGGTTCCCAATTTCCTAATGGGTCTAGTCACTGGAGCAGGAATCATTGGAATCATGATGATGACTTCTGGTTTCTTCCGCTTGCTCCCTGATCTTCCCA AAGTATTCTGGCGTTATCCAGTTTCATACATCAACTACGGCTCTTGGGGACTCCAGGGTGCATACAAAAACGACTTCATAGGGATGGAATTCGAGCCACT GGTACCGGGGGACCCGAAACTAACGGGGGAGTTCATCATCACAAACATATTTGGGGTGTCACTGAATCGTTCGAAGTGGTTCGATCTATCGATGATCTTT GTGATCCTAGTATTCTACAGGCTGCTGTTCTTTGTGGTTCTGAAGTTGAAGGAGAGAGCTTTGCCATTAATGAAGGATGCTTACTCGAAACGAACGCTGC ACCGGCTGGAGAAGAGGCCGTCTTTTCGGAAGGTGCCGTCGCTTGGTTCGAGAAGGCATCAGCCACTCTCTTCTCAAGAAGGCCTCAACTCTCCTCTCAA CTAA
AA sequence Show only first row Show all	>Lus10009961 pacid=23150114 polypeptide=Lus10009961 locus=Lus10009961.g ID=Lus10009961.BGIv1.0 annot-version=v1.0 MEIESGSAGNDYNGTVSGENDGDFRSSDNGRGMRGTYLVWEDLTVVLPNFGNKPTKRLLQGLSGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSKDVIMT GTVLYNGKKRRVDSGVAYVTQEDVLLGTLTVRETLTYSAMLRLPTSHSKQEISDVVEATIAEMGLQDCSDTLIGNWHLRGLSGGEKKRLALHWRSLRGHA SSRDGRTIISSIHQPSSEVFALFDDLFLLSSGEPVYFGEAKKAVQFFAQAGFPCPSKRNPSDHFLRCINSDFDAIAATLKGSQKIHDAPASSDPFMNMAT AEIKARLVEKYKRSNYSKETKARIKEISAIEGLEVQRRKGSQANWWKQLTTLTRRSFVNMYRDVGYYWARIAIYIVVSVCVGTIYYDVGDGYTAILARVA CGGFITGFMTFMSIGGFPSFIEEMKIFYRERLNGYYGAAVYILSNYLSSFPFLAVIALLSGNICFHLVRFRPGFSYLAYFCLNIFGCISVIESLMMVVAS LVPNFLMGLVTGAGIIGIMMMTSGFFRLLPDLPKVFWRYPVSYINYGSWGLQGAYKNDFIGMEFEPLVPGDPKLTGEFIITNIFGVSLNRSKWFDLSMIF VILVFYRLLFFVVLKLKERALPLMKDAYSKRTLHRLEKRPSFRKVPSLGSRRHQPLSSQEGLNSPLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10009961 [exp]	0	1
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Lus10040644 [exp]	2.4	0.9255
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Lus10018268 [exp]	3.2	0.9234
AT1G68530		KCS6, CER6, POP...	POLLEN-PISTIL INCOMPATIBILITY ...		Lus10034319 [exp]	4.2	0.9151
AT2G47240		CER8, LACS1	LONG-CHAIN ACYL-COA SYNTHASE 1...		Lus10032840 [exp]	4.9	0.9140
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Lus10028357 [exp]	5.7	0.8868
AT3G12080		EMB2738	embryo defective 2738, GTP-bin...		Lus10002557 [exp]	5.9	0.9121
AT5G65380			MATE efflux family protein (.1...		Lus10024945 [exp]	6.9	0.8992
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10002501 [exp]	7.1	0.8876
AT1G25450		KCS5, CER60	ECERIFERUM 60, 3-ketoacyl-CoA ...		Lus10041452 [exp]	7.5	0.8955
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Lus10011732 [exp]	8.1	0.8812

Compare expression of checked genes

Lus10009961 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.