Plant FIBer expression Database

Lus10009962 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003631
[exp]
1355 / 0 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G051100
[exp]
1211 / 0 ND /
Potri.001G255700
[exp]
1206 / 0 ND /
PFAM info
Representative CDS sequence
>Lus10009962 pacid=23150111 polypeptide=Lus10009962 locus=Lus10009962.g ID=Lus10009962.BGIv1.0 annot-version=v1.0
ATGTCTTTGTTCAATTTGACAGTTTTGCTGATATGGGTTCTCATGTCCATAAGCTGTTTCCTAATTATCCTTGCTTCTCCACCTAATCCTACTTGGTGCC
CTCTTGACTATCTCCAACAAGGCAATCAGCAGCAGGAATTCAAGCAGATGAGTGACCGGTTCTGGCAATTCCAGGAAGATTCCAACACATGGGTTGAGCT
GAAACTCCCTTTTGATCTGCTCTCTTGTCTTGATGACAACTGTACTAAAGTGGGTTCCATTGGTGGGGTGATGGATGATGACCAATCAGTAGCAGAATCT
GATCAAGTTGTCATCCTGGAGGAAGAAGAAGAAGGACATGATGTTCATGAAACTGTGCTGCCACAAAGGAAGAGGCTTTCATTGACTAAGATGTCAGAAA
CATCCATATGGGTCACTGGGGAAAGTGGGTCTATCTATGAAAGGTTTTGGAATGGAGTTCAGTGGGTGGTTGCTCCCCATGATCTTCCAATGTCTGCTGG
ACATGCAATTGGTGTTTTCATTGTCAATCACACCATTCTTGCTCTATCAGAATCAGGATTGTTGTACCAGATACAACTAACTGAGATTGCACAGCCAATT
TGGGTAGAGATTTCCTTCAGTGATGGGATGCAAAAAGGTTCCTCAATCATGATCAAGTCTGGTGTTGTTTCACATGATGGGGTAAAAGTTTATTTCTGCA
CAAAGAGTGGATCTTTGCTAGAACTGAGTGAGATTGATCCTACTAGGTGGGTTAATCATGGAAGGCCCCCGGGCGGAAATGTTGCAGCGATTGCTGATGC
AGCTACTGTAAGAACAGATGTTCTATACACAATAAGTTCGACCGGCGATCTTTACGAATACGATAGGATGTCAAAGCCATCATGGAAGAAGCATATATGG
AATGAAGGAGCAGTAGCTGATGCTTCTCTGGCATCAACAATGGGGTATTCTTTGCATGGAATGGCTGGAGATAGTTCAATATCTCTCTTCCTTTTAACTA
AGGACGAATCGAACGACAAGTTCTTCTCGTTGTTCCTCACAACCGCTACTGGATCAGTAATCGAATACCGGATAGCAAAACATTCCGGCATTACTCAAGA
CAACAACAACAATGCTGAAGCATGGTTGAACCATTTACACCCTCAGCATGCAAAAGCTGCAAGAGGAACTGCTGGGATCCAGATTCAAGTTGGGAGACAT
CTTTTCCCACTAGATGATGGAAGGCTTGCAGAGCTACACGTCCCGGGACAAGGAGGAGAAACCATAGGACCAAACTACCAAGCTAATGTTCGAAGAAAGC
CATCCACACGATACGTGTGGTCCACGATAGATGCCCCCGAGACCGAAGGATGGAATCTAGAGTATTGCAGGGAAGATAGAGGGCCTACAAATTGCATCAT
GGGGATAAAAGACGAGCAGAACGATGCAAGAACCGCAACAAGATCGAATATAAGGAGGCGAAAGGGTAGCCAAGCGCAACAAGAGTACTTATCAGCAGGC
TCTTCTTCTACTATTGTGAATCCAACAGTAGAAGATAATAGTGTCCCTGACAACTGGATCAACTCCAATTTTCGACTGCGGGTGATGCACGGAGGGAGGT
CATTCTTCCTCATAACAGAAAATGGATTCACTTTCGAGTATCTATACAATGAAAACGTCTGGCTTTGGCTCAGGCATGACCATTCGACGCCAATCAAAGG
TGCTCTAGGGAACTACAATGGGAGCTTCTTCTTGGTAGACACATATGGGAGCTTGCTTATTAGAGAGAGGAGTGGGAATGAATTGGCTTGGATCAATTGC
ACAGCAATGAGGAGAGGTAAACAGGTTATTGGAGGGCCTCCATGGGATTCCATACCAGGAAAACCTTTGAGAGCCACACCGGAAGACTCGATCTTCTTCG
TTAGCAAAAATGGAAGATTGGTTCAGTTCACAGTTGCACTAAGGAAGTTCAAGTGGAAAGACTGTAGTAGCCCACCAAACACCAAAGTAGCCACAATTAT
AGATCAGGAGCTCTTCAGGCGCAACATAATCTTTGTCACCGGAAAGAACGGGAGGCTATATCAGTACAACAAAGTAACGGAACTATGGCATGAGCATTAC
CAGTCTCAGCATTTGAGTCTTTCGAGATTTCCAGGAACAGCAATGAGATCATCGTTGCCATCTTCATTACATGGCTCTCTATTCATGGTGTCAGAGGACG
GTGGACTAGTCGAGTACAATTGGAACACGGGGGAAGGATGGAACTGGATTGAACACGGGACGCCAAATAAAGGCGTGAGCTTTACCACGTCTCCAAGCCC
GTGCTTTGAGAAAAACCTTCTGTTTCTGATAGGCACAGATGGGAAGGTTTATATAAGGTACTTGGATGAGATGACGTGGAAGTGGAGGAACTGCGGGTGC
CCTTATGTCGGGAAAGGGAAGGATGGTGATGACGAATCATGCATGGACAAAGATTTCGCAGCAAAGCTAGAGAAGGAAGAGGAGAGCTTACATGAACATA
ACCAACACTGTGATCCAAAGGTGGCTTCAACCAGGCCGATTCCGTTCTCCGATGACAGTGTGATCTTTGAGCTAAGAGATGGCAGGTTGGCGGAAATGAA
AAGATCGGAGGGCAGTCGTTGGGTGTGGTCGCGCACGATTGGAACACCTACAAGCTACTGCATCTCGAATTATTGGACGGCTGTGGCATCATGA
AA sequence
>Lus10009962 pacid=23150111 polypeptide=Lus10009962 locus=Lus10009962.g ID=Lus10009962.BGIv1.0 annot-version=v1.0
MSLFNLTVLLIWVLMSISCFLIILASPPNPTWCPLDYLQQGNQQQEFKQMSDRFWQFQEDSNTWVELKLPFDLLSCLDDNCTKVGSIGGVMDDDQSVAES
DQVVILEEEEEGHDVHETVLPQRKRLSLTKMSETSIWVTGESGSIYERFWNGVQWVVAPHDLPMSAGHAIGVFIVNHTILALSESGLLYQIQLTEIAQPI
WVEISFSDGMQKGSSIMIKSGVVSHDGVKVYFCTKSGSLLELSEIDPTRWVNHGRPPGGNVAAIADAATVRTDVLYTISSTGDLYEYDRMSKPSWKKHIW
NEGAVADASLASTMGYSLHGMAGDSSISLFLLTKDESNDKFFSLFLTTATGSVIEYRIAKHSGITQDNNNNAEAWLNHLHPQHAKAARGTAGIQIQVGRH
LFPLDDGRLAELHVPGQGGETIGPNYQANVRRKPSTRYVWSTIDAPETEGWNLEYCREDRGPTNCIMGIKDEQNDARTATRSNIRRRKGSQAQQEYLSAG
SSSTIVNPTVEDNSVPDNWINSNFRLRVMHGGRSFFLITENGFTFEYLYNENVWLWLRHDHSTPIKGALGNYNGSFFLVDTYGSLLIRERSGNELAWINC
TAMRRGKQVIGGPPWDSIPGKPLRATPEDSIFFVSKNGRLVQFTVALRKFKWKDCSSPPNTKVATIIDQELFRRNIIFVTGKNGRLYQYNKVTELWHEHY
QSQHLSLSRFPGTAMRSSLPSSLHGSLFMVSEDGGLVEYNWNTGEGWNWIEHGTPNKGVSFTTSPSPCFEKNLLFLIGTDGKVYIRYLDEMTWKWRNCGC
PYVGKGKDGDDESCMDKDFAAKLEKEEESLHEHNQHCDPKVASTRPIPFSDDSVIFELRDGRLAEMKRSEGSRWVWSRTIGTPTSYCISNYWTAVAS

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10009962
[exp]
0 1
AT5G60580 RING/U-box superfamily protein... Lus10021482
[exp]
4.7 0.8093
AT2G26920 Ubiquitin-associated/translati... Lus10041640
[exp]
5.9 0.8012
AT3G44480 COG1, RPP10, RP... recognition of peronospora par... Lus10007455
[exp]
8.1 0.7898
AT3G02570 PMI1, MEE31 PHOSPHOMANNOSE ISOMERASE 1, MA... Lus10017603
[exp]
8.5 0.7657
AT3G12050 Aha1 domain-containing protein... Lus10029141
[exp]
8.8 0.7745
AT1G45616 AtRLP6 receptor like protein 6 (.1) Lus10003389
[exp]
9.2 0.7595
AT2G35510 SRO1 similar to RCD one 1 (.1) Lus10035390
[exp]
9.3 0.8069
AT4G33620 Cysteine proteinases superfami... Lus10020445
[exp]
14.4 0.8031
AT2G31730 bHLH basic helix-loop-helix (bHLH) ... Lus10024071
[exp]
14.7 0.8063
AT1G47710 Serine protease inhibitor (SER... Lus10034364
[exp]
15.7 0.7785

Lus10009962 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.