Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51510 264 / 4e-90 Y14 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G11400 57 / 2e-09 ATEIF3G1, EIF3G1 eukaryotic translation initiation factor 3G1 (.1.2) AT5G64200 53 / 3e-08 ATSC35, At-SC35 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) AT5G06000 49 / 1e-06 ATEIF3G2, EIF3G2 ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITIATION FACTOR 3G2, eukaryotic translation initiation factor 3G2 (.1) AT4G27000 49 / 1e-06 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G54580 46 / 3e-06 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G06210 45 / 7e-06 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT2G21440 46 / 1e-05 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G54900 46 / 1e-05 ATRBP45A RNA-binding protein 45A (.1) AT1G74230 45 / 1e-05 GR-RBP5 glycine-rich RNA-binding protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003632 [exp] 365 / 5e-129 AT1G51510 260 / 3e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10017852 [exp] 54 / 2e-08 AT5G61030 178 / 7e-55 glycine-rich RNA-binding protein 3 (.1) Lus10034685 [exp] 53 / 4e-08 AT5G61030 177 / 7e-54 glycine-rich RNA-binding protein 3 (.1) Lus10017459 [exp] 53 / 6e-08 AT3G11400 447 / 3e-160 eukaryotic translation initiation factor 3G1 (.1.2) Lus10003957 [exp] 52 / 6e-08 AT5G64200 217 / 9e-70 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Lus10023802 [exp] 52 / 8e-08 AT5G64200 217 / 1e-68 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Lus10030482 [exp] 52 / 9e-08 AT3G11400 459 / 9e-165 eukaryotic translation initiation factor 3G1 (.1.2) Lus10028823 [exp] 51 / 3e-07 AT3G11400 459 / 9e-165 eukaryotic translation initiation factor 3G1 (.1.2) Lus10021154 [exp] 50 / 3e-07 AT5G61030 188 / 5e-58 glycine-rich RNA-binding protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G051000 [exp] 309 / 9e-108 AT1G51510 248 / 2e-84 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G255600 [exp] 270 / 3e-92 AT1G51510 230 / 3e-77 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G048300 [exp] 132 / 1e-38 AT1G51510 134 / 1e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.003G023800 [exp] 54 / 2e-08 AT5G64200 207 / 4e-66 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Potri.010G199000 [exp] 52 / 7e-08 AT3G11400 422 / 4e-150 eukaryotic translation initiation factor 3G1 (.1.2) Potri.008G060000 [exp] 52 / 1e-07 AT3G11400 422 / 5e-150 eukaryotic translation initiation factor 3G1 (.1.2) Potri.003G149600 [exp] 51 / 4e-07 AT4G19610 646 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1) Potri.012G061600 [exp] 50 / 5e-07 AT5G61030 181 / 9e-56 glycine-rich RNA-binding protein 3 (.1) Potri.002G095800 [exp] 49 / 9e-07 AT5G64200 204 / 5e-65 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Potri.005G165400 [exp] 48 / 2e-06 AT5G64200 202 / 2e-63 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10009963 pacid=23150086 polypeptide=Lus10009963 locus=Lus10009963.g ID=Lus10009963.BGIv1.0 annot-version=v1.0 ATGGCGAATGTTGAAGCAGAGGCGGTGGACTTCGAGCCGGAGGAGGATGATCTGATGGACGAGGAAGGAGCTGTAGACGTCGACGCCTCCTCCCCGCGCG CGCAGCAGCCGAAGCTCAAGTCCGCCATCACCGGCGGAGCATCTACTTCTCTGGCTGCTCCTAAGAAAACCAAAGGCCGTGGATTTCGCGAGGAAGCTGA CGCCGAGCGTCAGAGTCGCCTCGCTGGGCGGGACTTCGATTCTCTTGGCTCTGAAGTTGGTCCGGGTCCTCAGCGATCCATCGAAGGGTGGATTGTTTTG GTTACTGGTGTCCATGAAGAGGCACAAGAGGATGATTTGCAGAATGCTTTTGGCGAGTTCGGGGATATTAAGAATCTGCACTTGAATCTTGACCGTCGTA CTGGTTTTGTTAAGGGATATGCGCTGATTGAATATGAGAAATTTGAGGAAGCACAGAATGCTATTGTTACATTAAACGGAGATCAGATTCTTGAACAGAC TGTTACTGTTGATTGGGCCTTCTGCAATGGTCCCAGTACCGGCTCTCTCAAGAGAAAGAATGCAAGGCAACTTGATGTACCCGGTGACTTTGTGAATGTA CCTTTATTGGTCAGGCTAGTACTGGAATGGGCGAACGCATCGCTCGAGGAGTCCAAGGAGGCGATATTAGTCGAAGTTCCAGAGCTGTGTTCTTCTGGTG GGGCTGCTGAGGGTTGCTGGTTGTGA
AA sequence Show only first row Show all	>Lus10009963 pacid=23150086 polypeptide=Lus10009963 locus=Lus10009963.g ID=Lus10009963.BGIv1.0 annot-version=v1.0 MANVEAEAVDFEPEEDDLMDEEGAVDVDASSPRAQQPKLKSAITGGASTSLAAPKKTKGRGFREEADAERQSRLAGRDFDSLGSEVGPGPQRSIEGWIVL VTGVHEEAQEDDLQNAFGEFGDIKNLHLNLDRRTGFVKGYALIEYEKFEEAQNAIVTLNGDQILEQTVTVDWAFCNGPSTGSLKRKNARQLDVPGDFVNV PLLVRLVLEWANASLEESKEAILVEVPELCSSGGAAEGCWL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51510		Y14	RNA-binding (RRM/RBD/RNP motif...		Lus10009963 [exp]	0	1
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10040855 [exp]	1.0	0.9205
AT5G20510	Alfin	AL5	alfin-like 5 (.1)		Lus10037655 [exp]	4.9	0.8863
AT3G16080			Zinc-binding ribosomal protein...		Lus10011446 [exp]	4.9	0.8890
AT4G21110			G10 family protein (.1)		Lus10014385 [exp]	6.5	0.8598
AT4G10710		SPT16	global transcription factor C ...		Lus10039490 [exp]	6.9	0.8419
					Lus10038266 [exp]	9.7	0.8650
AT5G20510	Alfin	AL5	alfin-like 5 (.1)		Lus10015637 [exp]	10.8	0.8499
AT5G02610			Ribosomal L29 family protein ...		Lus10025292 [exp]	12.4	0.8426
AT3G53730			Histone superfamily protein (....		Lus10005898 [exp]	15.4	0.8554
AT1G51060		HTA10	histone H2A 10 (.1)		Lus10032464 [exp]	15.5	0.8770

Compare expression of checked genes

Lus10009963 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.