Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51950 187 / 2e-54 C3HZnF Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) AT3G63450 176 / 5e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT3G21100 154 / 9e-44 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G12440 153 / 5e-41 C3HZnF CCCH-type zinc fingerfamily protein with RNA-binding domain (.1.2.3) AT1G51520 134 / 3e-35 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G05160 129 / 5e-33 C3HZnF CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) AT3G52980 100 / 3e-11 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1) AT1G51530 64 / 6e-11 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G17640 43 / 0.0003 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G14300 42 / 0.0006 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019044 [exp] 254 / 1e-78 AT3G51950 341 / 4e-110 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10027351 [exp] 181 / 2e-54 AT3G21100 235 / 6e-77 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10005319 [exp] 177 / 3e-50 AT3G51950 420 / 2e-141 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10039575 [exp] 176 / 8e-50 AT3G51950 427 / 3e-144 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10005023 [exp] 162 / 1e-44 AT3G21100 380 / 4e-125 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10019042 [exp] 161 / 4e-44 AT3G21100 368 / 6e-120 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10014915 [exp] 154 / 1e-41 AT3G21100 384 / 7e-127 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10012333 [exp] 142 / 1e-37 AT2G05160 488 / 2e-168 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Lus10006379 [exp] 140 / 8e-37 AT2G05160 467 / 1e-160 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G255532 [exp] 202 / 5e-59 AT3G51950 347 / 8e-112 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.009G050700 [exp] 201 / 1e-58 AT3G51950 362 / 4e-117 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.003G204300 [exp] 189 / 4e-54 AT3G51950 342 / 1e-109 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.001G020300 [exp] 189 / 2e-53 AT3G51950 330 / 1e-104 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.001G255400 [exp] 175 / 7e-49 AT3G21100 338 / 2e-107 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.009G050600 [exp] 168 / 2e-46 AT3G21100 360 / 4e-116 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G221100 [exp] 140 / 7e-37 AT2G05160 469 / 1e-160 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Potri.014G165500 [exp] 140 / 9e-37 AT2G05160 513 / 8e-178 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Potri.001G196500 [exp] 42 / 0.0004 AT1G17640 274 / 4e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.003G040900 [exp] 42 / 0.0007 AT1G17640 272 / 3e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10009964 pacid=23150096 polypeptide=Lus10009964 locus=Lus10009964.g ID=Lus10009964.BGIv1.0 annot-version=v1.0 ATGGATTCCTACGAAGCTACGAAGACAGTGTTCTCAAGGATCCAAGCCCTCGACCCAGACAACTCCTCCAAAATCATGGGCTACCTCCTTCTTCAAGATC AAGGAGACAAGGAAATGATTCGTTTAGCTTTCGGACCTGAATCTTCCCTCCACAATCTCATCCTCCAGGCCAAAACCCAATTAGGCTTACCAATTTCCCC TTCTTCTTCTTCCACTTCTTCTTCAACCTCTGCATCTAACAACACTCCTTCAACGCCTTCAACTCCTTCTTCTCCTTCTCCATTTTTATCATCCAGGCCC ACTCCTCTGTCACTCTCGAGAATCTCTTATGAGAAATTGCAGACCAACAATAACCAGTCTTCTCCTTCTTCCTTGAGCTGTCTTTCCTACGCCAATGTCG TCAATGGTGGAGCGAGTCATACTAATAATAGTAATAGTAATAGTAATAATAACAACAATCATGGCTTTATGAACGGTAATGGTAATGATTTGAGTGTTGA CGAGTATCAGGTTCACAGAGACCACTTCTCTTTCCTCAACGAGAATCATAATGCAGAGCAGGTGTTCGATCAAATGCCTGACTCAGCCCTGCTGAGCCCA AACGGCGTCGGACATGCGAGACCTGCAAGTTCCTTCACGGAGGAGAGTCTGCAACTGATGGTGGTTCTGCTGCGAGCTCCTCATTTCCTGAGGACTTACG ACACGTGCATCAATTTACTTCTTCAGCAACAGAGTGATTCAGCAGCTCAAAGATCGGCTGCATTGATGATGGGGGACGAGCTTCAGAAGCTGAGCCGGTG CCGGTCTGTGAGGAGCAATGATTTCTCGCCGTTGGGATTGGGAGGAGGGATAATGAGCCCAATTGCCAGACAGATCTACTTGACGTTTCCAGCTGATAGT ACATTCAGAGAAGAGGATGTTTCCAATTACTTTAGCATTTATGGGCCAGTGCAAGACGTGAGAATCCCATACCAGCAGAAGAGAATGTTTGGATTCGTCA CGTTCGTTTACCCAGAAACAGTGAAGCTCATCTTAGCCAAAGGGAACCCTCACTTTGTCTGTGACTCTCGTGTCTTGGTCAAGCCTTACAAGGAGAAAGG CAAATTCCCTGAAAAGTATAATCTTTATTTTCTCTCCCGTTAA
AA sequence Show only first row Show all	>Lus10009964 pacid=23150096 polypeptide=Lus10009964 locus=Lus10009964.g ID=Lus10009964.BGIv1.0 annot-version=v1.0 MDSYEATKTVFSRIQALDPDNSSKIMGYLLLQDQGDKEMIRLAFGPESSLHNLILQAKTQLGLPISPSSSSTSSSTSASNNTPSTPSTPSSPSPFLSSRP TPLSLSRISYEKLQTNNNQSSPSSLSCLSYANVVNGGASHTNNSNSNSNNNNNHGFMNGNGNDLSVDEYQVHRDHFSFLNENHNAEQVFDQMPDSALLSP NGVGHARPASSFTEESLQLMVVLLRAPHFLRTYDTCINLLLQQQSDSAAQRSAALMMGDELQKLSRCRSVRSNDFSPLGLGGGIMSPIARQIYLTFPADS TFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYKEKGKFPEKYNLYFLSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Lus10009964 [exp]	0	1
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10017774 [exp]	4.4	0.8941
AT2G27060			Leucine-rich repeat protein ki...		Lus10025541 [exp]	6.8	0.8922
AT1G53470		MSL4	mechanosensitive channel of sm...		Lus10038148 [exp]	8.4	0.8841
AT5G23910			ATP binding microtubule motor ...		Lus10039243 [exp]	9.1	0.9208
AT1G50240		FU	FUSED, Protein kinase family p...		Lus10039167 [exp]	12.4	0.9207
AT2G27060			Leucine-rich repeat protein ki...		Lus10026756 [exp]	15.5	0.8804
AT1G68560		AXY3, TRG1, XYL...	thermoinhibition resistant ger...		Lus10034315 [exp]	16.7	0.8855
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Lus10019044 [exp]	17.1	0.8569
AT1G08260		ESD7, EMB142, E...	TILTED 1, EARLY IN SHORT DAYS ...		Lus10020576 [exp]	18.7	0.9029
AT1G02730		SOS6, ATCSLD5	SALT OVERLY SENSITIVE 6, CELLU...		Lus10010024 [exp]	19.8	0.9033

Compare expression of checked genes

Lus10009964 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.