Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01670 56 / 2e-09 unknown protein AT3G62070 50 / 4e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038023 [exp] 179 / 4e-55 AT2G46940 162 / 4e-49 unknown protein Lus10007198 [exp] 79 / 4e-17 AT2G46940 157 / 1e-46 unknown protein Lus10010083 [exp] 74 / 2e-15 AT2G46940 160 / 7e-48 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G185700 [exp] 76 / 7e-16 AT2G46940 111 / 4e-29 unknown protein Potri.014G111000 [exp] 76 / 8e-16 AT2G46940 148 / 4e-43 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009965 pacid=23176718 polypeptide=Lus10009965 locus=Lus10009965.g ID=Lus10009965.BGIv1.0 annot-version=v1.0 ATGGCGTCCGATGAGACCTCCGCCGTACTTTCTCCCTCCGTCCACGACGACTTCGATCACGACAACGACTACGGCTACGACCTTCATAATCCACACCCTC ACAGCTCCCACAACCTCTCCAGGCTCTCCGTCTGCACCAGCTCCATGTACACCACCACCGACGACGGCGACGAGGACTCCATGAGCAGGATGTTCATGTC CGGATTGTCGATCGAGAGCTTCGACGCCGATGCAGAAGACAACGATGATGACGACAAAGGGAAGAAGAGCTTCGACCTGATATCGTCGGAAGATTTTGAT TCGGACAAAGATCCTGCAAGCTGCCGCTCCCTCCCTGTTACTCCTCCGCGGCGGCGGAGGAATCGAGGAGGAGGAGGAGTCGCCGCAGCAGGGTCTTTGA TTGCGGCGGCGGTGAAGCAGTACGCTAGCGAGAACGAAGGAGGAGGAGCGAAGTCGAAGAGGAATTCGAGACGGCGGCGGTTAACTAGCGATCAGAGAAG AGGCGGAAGAAGATTTTTCACCGATTATGGAAACTGTTGGAGCGGAGAGAGCGAGAACGGTGGCGGCGGCGCCGGAGGAGGGATGGTGGTTATTACACGG CCGAAAGGAGGGAACCGATCTCTGTGTATGGATTTGGGAGAAGTGAAGGCTTGTAAAGATTTAGGGTTCGAGCTAGAGCACGAACGGATGGTTGAGGGGG GTCTCTGTTTCCGGCACCAGCAGCGGCGGCGATTCTCCGATCGCTAA
AA sequence Show only first row Show all	>Lus10009965 pacid=23176718 polypeptide=Lus10009965 locus=Lus10009965.g ID=Lus10009965.BGIv1.0 annot-version=v1.0 MASDETSAVLSPSVHDDFDHDNDYGYDLHNPHPHSSHNLSRLSVCTSSMYTTTDDGDEDSMSRMFMSGLSIESFDADAEDNDDDDKGKKSFDLISSEDFD SDKDPASCRSLPVTPPRRRRNRGGGGVAAAGSLIAAAVKQYASENEGGGAKSKRNSRRRRLTSDQRRGGRRFFTDYGNCWSGESENGGGGAGGGMVVITR PKGGNRSLCMDLGEVKACKDLGFELEHERMVEGGLCFRHQQRRRFSDR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46940			unknown protein		Lus10009965 [exp]	0	1
					Lus10036703 [exp]	4.8	0.8718
AT3G09880		ATB' BETA, ATB'...	Protein phosphatase 2A regulat...		Lus10021511 [exp]	5.7	0.8577
AT1G25440	CO	COL16	B-box type zinc finger protein...		Lus10041449 [exp]	5.7	0.8607
AT5G54540			Uncharacterised conserved prot...		Lus10003594 [exp]	6.6	0.8560
AT3G49940	AS2	LBD38	LOB domain-containing protein ...		Lus10011530 [exp]	8.0	0.8243
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10030251 [exp]	12.7	0.7929
AT1G72100			late embryogenesis abundant do...		Lus10000723 [exp]	14.2	0.8447
AT2G39210			Major facilitator superfamily ...		Lus10021512 [exp]	16.9	0.8519
AT5G02020		SIS	Salt Induced Serine rich, unkn...		Lus10021101 [exp]	18.0	0.8395
AT4G08570			Heavy metal transport/detoxifi...		Lus10039419 [exp]	18.1	0.8439

Compare expression of checked genes

Lus10009965 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.