Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62060 604 / 0 Pectinacetylesterase family protein (.1) AT2G46930 593 / 0 Pectinacetylesterase family protein (.1) AT5G26670 578 / 0 Pectinacetylesterase family protein (.1.2) AT3G05910 577 / 0 Pectinacetylesterase family protein (.1.2) AT1G57590 546 / 0 Pectinacetylesterase family protein (.1) AT4G19420 446 / 1e-155 Pectinacetylesterase family protein (.1.2) AT1G09550 424 / 3e-147 Pectinacetylesterase family protein (.1) AT5G23870 420 / 2e-145 Pectinacetylesterase family protein (.1.2.3) AT3G09410 410 / 2e-141 Pectinacetylesterase family protein (.1.3) AT5G45280 382 / 5e-131 Pectinacetylesterase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038024 [exp] 771 / 0 AT3G62060 610 / 0.0 Pectinacetylesterase family protein (.1) Lus10007200 [exp] 636 / 0 AT3G62060 585 / 0.0 Pectinacetylesterase family protein (.1) Lus10010084 [exp] 543 / 0 AT5G26670 491 / 9e-174 Pectinacetylesterase family protein (.1.2) Lus10034767 [exp] 428 / 1e-148 AT4G19420 574 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10033305 [exp] 427 / 5e-148 AT4G19420 572 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10039238 [exp] 409 / 2e-141 AT5G23870 513 / 0.0 Pectinacetylesterase family protein (.1.2.3) Lus10035682 [exp] 408 / 1e-140 AT4G19420 556 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10033301 [exp] 407 / 1e-140 AT5G45280 546 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10024398 [exp] 401 / 1e-137 AT3G09410 553 / 0.0 Pectinacetylesterase family protein (.1.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G110900 [exp] 624 / 0 AT3G62060 611 / 0.0 Pectinacetylesterase family protein (.1) Potri.013G000900 [exp] 598 / 0 AT3G05910 629 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.005G001500 [exp] 591 / 0 AT3G05910 602 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.010G004400 [exp] 555 / 0 AT5G26670 559 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.006G084900 [exp] 431 / 2e-149 AT3G09410 570 / 0.0 Pectinacetylesterase family protein (.1.3) Potri.004G234100 [exp] 430 / 4e-149 AT4G19420 597 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.015G145400 [exp] 416 / 3e-144 AT5G23870 509 / 0.0 Pectinacetylesterase family protein (.1.2.3) Potri.012G142300 [exp] 407 / 8e-141 AT5G23870 511 / 0.0 Pectinacetylesterase family protein (.1.2.3) Potri.004G233900 [exp] 406 / 2e-140 AT5G45280 567 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.003G046200 [exp] 396 / 3e-136 AT5G45280 541 / 0.0 Pectinacetylesterase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF03283 [flax] [poplar] PAE Pectinacetylesterase
Representative CDS sequence Show only first row Show all	>Lus10009966 pacid=23176657 polypeptide=Lus10009966 locus=Lus10009966.g ID=Lus10009966.BGIv1.0 annot-version=v1.0 ATGGAGTCGAAGAACCAGCTGCTATACCTCCGTTACTTCAGCATTGCTATCATTTTCTCGGCAACTACCACTACCTCCGCCGCCGCCAGATCTGATTCCG CCGCCGCCGTCCAGGCATTTCTCGAAACTTCCGCCGCCGCCGCTTCATCGTCAGCTCTATCCAAACCTCTCATGGTTCCGCTCACTCTCATTCAAGGAGC CGATTCCAAAGGAGCTGTTTGTTTAGATGGGACGCTGCCTGGCTACCATATCCATAGAGGGTCTGGAATTGGTGCAAACAGTTGGCTCATTCAGTTGGAG GGAGGTGGATGGTGCAACTCTGTGAAGAATTGTATATACAGGAAAACTACACGGCGTGGTTCGTCCAAATACATGGAGAAGGTTATACCATTCACTGGAA TCTTGAGTGAAAAACCTGAAGAAAACCCTGATTTCTTCAACTGGAATAGGATCAAGTTACGTTACTGCGATGGTGCGTCTTTCAATGGCGATAGCCAGAA CGAGGCTGCACAGCTCTACTTTCGAGGACAACGAATCTGGTCCGAAGCCATGGAACATTTTATGTCCCTCGGAATGAAGTCAGCAAACCAGGCTCTTCTA TCTGGTTGCTCTGCTGGAGGGCTGGCATCAATTTTGCACTGTGATGAGTTCAGTGCCATGTTCACTCAATCCACCAAAGTCAAATGCTTAAGTGATGCCG GCATGTTCCTAAATGCAAAGGATGTATCTGGGGGAAACACCCTCCAAGCATTCTATAATGGAGTTGTTAGCACACAGCAACTGCAGAGGGACCTACCAAG TTCTTGCACCAACCATTTGGATCCTACTTCTTGCTTCTTCCCCCAAAATTTGGTTGACAACGTCCAGACCCCCATGTTTTTACTCAATGCAGCCTACGAT GCATGGCAGATTCAAGCTAGTTTAGCTCCACCATCAGCGGATCCTAATGGGCAGTGGGATGGCTGCAAAAAGAACCATTTACAGTGTAACTCAACACAGA TCAACTTCTTTCAAGATTTCAGGAACCAAATGCTGAATGCAGTGAAGGGTTTCTCCAACTCCCAACGGAACGGGTTGTTCATAAATTCGTGCTTTGCGCA TTGCCAAACCGAAAAGCAGGATACATGGTTTGCTGATGATTCTCCTGTATTGAACAAGAAGACGGTTGCACAATCAGTGGGAGACTGGTACTTCGATCGA GTTGCCGTCAAGGCTATCGACTGTCCGTATCCCTGCGACAACTCCTGCCATAATCTAGTATTCAAGTGA
AA sequence Show only first row Show all	>Lus10009966 pacid=23176657 polypeptide=Lus10009966 locus=Lus10009966.g ID=Lus10009966.BGIv1.0 annot-version=v1.0 MESKNQLLYLRYFSIAIIFSATTTTSAAARSDSAAAVQAFLETSAAAASSSALSKPLMVPLTLIQGADSKGAVCLDGTLPGYHIHRGSGIGANSWLIQLE GGGWCNSVKNCIYRKTTRRGSSKYMEKVIPFTGILSEKPEENPDFFNWNRIKLRYCDGASFNGDSQNEAAQLYFRGQRIWSEAMEHFMSLGMKSANQALL SGCSAGGLASILHCDEFSAMFTQSTKVKCLSDAGMFLNAKDVSGGNTLQAFYNGVVSTQQLQRDLPSSCTNHLDPTSCFFPQNLVDNVQTPMFLLNAAYD AWQIQASLAPPSADPNGQWDGCKKNHLQCNSTQINFFQDFRNQMLNAVKGFSNSQRNGLFINSCFAHCQTEKQDTWFADDSPVLNKKTVAQSVGDWYFDR VAVKAIDCPYPCDNSCHNLVFK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62060			Pectinacetylesterase family pr...		Lus10009966 [exp]	0	1
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Lus10018651 [exp]	2.2	0.8742
AT5G58610			PHD finger transcription facto...		Lus10015266 [exp]	5.5	0.8189
AT3G54660		ATGR2, EMB2360,...	glutathione reductase (.1)		Lus10024857 [exp]	7.1	0.8528
AT2G18950		ATHPT, VTE2, TP...	VITAMIN E 2, homogentisate phy...		Lus10006961 [exp]	9.2	0.8110
AT2G46420			Plant protein 1589 of unknown ...		Lus10030264 [exp]	10.1	0.8385
AT1G64650			Major facilitator superfamily ...		Lus10003219 [exp]	10.2	0.8207
AT1G71090			Auxin efflux carrier family pr...		Lus10004059 [exp]	14.0	0.7991
AT2G45960		PIP1;2, ATHH2, ...	TRANSMEMBRANE PROTEIN A, NAMED...		Lus10014840 [exp]	15.4	0.7980
AT5G48030		GFA2	gametophytic factor 2 (.1)		Lus10035855 [exp]	16.5	0.8312
AT4G15210		BAM5, AT-BETA-A...	REDUCED BETA AMYLASE 1, ARABID...		Lus10018491 [exp]	16.9	0.8029

Compare expression of checked genes

Lus10009966 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.