Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01700 409 / 1e-145 Chitinase family protein (.1) AT1G02360 408 / 3e-145 Chitinase family protein (.1) AT3G12500 314 / 4e-107 PR-3, PR3, CHI-B, B-CHI, ATHCHIB PATHOGENESIS-RELATED 3, basic chitinase (.1) AT3G16920 177 / 1e-53 ATCTL2 chitinase-like protein 2 (.1) AT1G05850 176 / 3e-53 CTL1, HOT2, ERH2, ELP1, POM1, ATCTL1 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1) AT2G43590 173 / 5e-53 Chitinase family protein (.1) AT3G54420 171 / 4e-52 ATCHITIV, CHIV, ATEP3 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) AT2G43580 152 / 6e-45 Chitinase family protein (.1) AT2G43570 147 / 6e-43 CHI "chitinase, putative", chitinase, putative (.1) AT2G43610 144 / 1e-41 Chitinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038026 [exp] 520 / 0 AT1G02360 412 / 9e-147 Chitinase family protein (.1) Lus10041830 [exp] 280 / 4e-94 AT3G12500 402 / 4e-141 PATHOGENESIS-RELATED 3, basic chitinase (.1) Lus10028377 [exp] 269 / 1e-89 AT3G12500 393 / 1e-137 PATHOGENESIS-RELATED 3, basic chitinase (.1) Lus10003226 [exp] 184 / 3e-56 AT3G54420 269 / 2e-89 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10035625 [exp] 182 / 7e-56 AT3G54420 266 / 7e-89 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10035621 [exp] 180 / 6e-54 AT3G54420 243 / 2e-78 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10000453 [exp] 174 / 2e-53 AT3G54420 382 / 3e-135 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10037737 [exp] 175 / 7e-53 AT3G16920 499 / 2e-179 chitinase-like protein 2 (.1) Lus10035624 [exp] 173 / 2e-52 AT2G43590 246 / 5e-81 Chitinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G111800 [exp] 424 / 1e-151 AT4G01700 422 / 1e-150 Chitinase family protein (.1) Potri.002G186500 [exp] 419 / 2e-149 AT1G02360 413 / 2e-147 Chitinase family protein (.1) Potri.004G182000 [exp] 307 / 1e-104 AT3G12500 460 / 5e-164 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G141700 [exp] 302 / 7e-103 AT3G12500 405 / 3e-142 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G142150 [exp] 288 / 3e-98 AT3G12500 365 / 8e-128 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G142300 [exp] 261 / 1e-86 AT3G12500 340 / 1e-116 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G141800 [exp] 254 / 1e-83 AT3G12500 351 / 9e-121 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G142000 [exp] 243 / 2e-79 AT3G12500 346 / 6e-119 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.004G182100 [exp] 224 / 8e-72 AT3G12500 306 / 7e-103 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.013G125000 [exp] 182 / 2e-56 AT3G54420 421 / 1e-150 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0037 [flax] [poplar] Lysozyme PF00182 [flax] [poplar] Glyco_hydro_19 Chitinase class I
Representative CDS sequence Show only first row Show all	>Lus10009968 pacid=23176719 polypeptide=Lus10009968 locus=Lus10009968.g ID=Lus10009968.BGIv1.0 annot-version=v1.0 ATGGCGCTTATTCCGCCGCCACTCGCCGTCCTCATATCAATCGCCCTCACCCTCTTCTCCTTCTCCGAATCGGCTCGAGACTCATCGCTAAAATCCTCCA ACTACCTCCTCACTAAAGACCTCTACAACTCCATCTTCCTCCACAAGGACGACCCCGCCTGCCCGGGGAAGGACTTCTACACCTACGAGTCCTTCATTCG GGCTGCTCGTTGCTTCCCCAAATTTGGGACCACGGGCAGCCCTACCACGCGGCGGAGAGAGGTGGCCGCGTTTCTGGCCCAGATATCCCACGAGACCACG GGCGGGTGGGCCACTGCTCCCGATGGGCCCTACTCGTGGGGGCTTTGCTTTAAAGAGGAAGTTAGCCCACAGGGAAACTATTGCGATGCTACTAATACCC AGTGGCCATGTGTTCCTGGCAAGTCCTACAAAGGAAGAGGACCCATCCAATTGTCTTGGAACTATAATTACGGGCAAGCAGGGAGGGCACTCGGATTTGA TGGCCTAAACAACCCAGAAGTCGTGGCCAATAACTCGGTGATCGCATTTAAGACCGCACTTTGGTTTTGGATGACGGAGCAGAATCCCAAGCCCTCGTGC CACAACGTGATGGTCGGTAAGTACAGGCTCCGAGGGGCCGATTTAGCTGCAAACCGAACAGTCGGGTTTGGTATGGTGACCAATATAATCAATGGTGGTT TGGAATGTGGGCTGCCCAACGATGCTCGGGTCAACAGTCGGATCGGGTTTTTCCGAAGATATGCCGGGATGTTTAATGTGGATACCGGGCCCAATTTGGA TTGTGCGAATCAGAAGCCCTTTTAG
AA sequence Show only first row Show all	>Lus10009968 pacid=23176719 polypeptide=Lus10009968 locus=Lus10009968.g ID=Lus10009968.BGIv1.0 annot-version=v1.0 MALIPPPLAVLISIALTLFSFSESARDSSLKSSNYLLTKDLYNSIFLHKDDPACPGKDFYTYESFIRAARCFPKFGTTGSPTTRRREVAAFLAQISHETT GGWATAPDGPYSWGLCFKEEVSPQGNYCDATNTQWPCVPGKSYKGRGPIQLSWNYNYGQAGRALGFDGLNNPEVVANNSVIAFKTALWFWMTEQNPKPSC HNVMVGKYRLRGADLAANRTVGFGMVTNIINGGLECGLPNDARVNSRIGFFRRYAGMFNVDTGPNLDCANQKPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02360			Chitinase family protein (.1)		Lus10009968 [exp]	0	1
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10038178 [exp]	1.7	0.8755
AT5G25930			Protein kinase family protein ...		Lus10034976 [exp]	2.6	0.8439
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Lus10005343 [exp]	4.0	0.8591
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10006302 [exp]	4.5	0.8185
AT5G24600			Protein of unknown function, D...		Lus10005272 [exp]	4.5	0.8585
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10025252 [exp]	6.0	0.8667
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Lus10018621 [exp]	7.9	0.8431
					Lus10039778 [exp]	9.4	0.8432
AT2G15780			Cupredoxin superfamily protein...		Lus10025269 [exp]	11.2	0.8183
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Lus10002742 [exp]	15.2	0.8060

Compare expression of checked genes

Lus10009968 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.