Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01730 395 / 1e-133 DHHC-type zinc finger family protein (.1) AT3G22180 149 / 1e-38 DHHC-type zinc finger family protein (.1) AT4G15080 132 / 7e-33 DHHC-type zinc finger family protein (.1) AT2G33640 129 / 5e-32 DHHC-type zinc finger family protein (.1) AT1G69420 100 / 1e-22 DHHC-type zinc finger family protein (.1.2) AT3G56930 54 / 2e-07 DHHC-type zinc finger family protein (.1.2) AT3G26935 49 / 4e-06 DHHC-type zinc finger family protein (.1) AT5G05070 47 / 2e-05 DHHC-type zinc finger family protein (.1) AT3G48760 45 / 0.0001 DHHC-type zinc finger family protein (.1) AT5G50020 45 / 0.0001 DHHC-type zinc finger family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038029 [exp] 755 / 0 AT4G01730 515 / 4e-180 DHHC-type zinc finger family protein (.1) Lus10039043 [exp] 154 / 2e-40 AT4G15080 830 / 0.0 DHHC-type zinc finger family protein (.1) Lus10027339 [exp] 147 / 9e-38 AT4G15080 822 / 0.0 DHHC-type zinc finger family protein (.1) Lus10026632 [exp] 127 / 2e-31 AT1G69420 588 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10016036 [exp] 125 / 2e-30 AT2G33640 585 / 0.0 DHHC-type zinc finger family protein (.1) Lus10037133 [exp] 113 / 9e-27 AT1G69420 684 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10030426 [exp] 112 / 2e-26 AT1G69420 606 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10036798 [exp] 112 / 3e-26 AT1G69420 766 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10025157 [exp] 108 / 5e-25 AT2G33640 392 / 2e-130 DHHC-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G112000 [exp] 503 / 5e-176 AT4G01730 526 / 0.0 DHHC-type zinc finger family protein (.1) Potri.002G186800 [exp] 489 / 3e-170 AT4G01730 520 / 0.0 DHHC-type zinc finger family protein (.1) Potri.002G006900 [exp] 158 / 5e-42 AT2G33640 553 / 0.0 DHHC-type zinc finger family protein (.1) Potri.005G254366 [exp] 140 / 3e-38 AT2G33640 395 / 1e-135 DHHC-type zinc finger family protein (.1) Potri.016G018400 [exp] 146 / 1e-37 AT4G15080 800 / 0.0 DHHC-type zinc finger family protein (.1) Potri.006G020800 [exp] 136 / 3e-34 AT4G15080 786 / 0.0 DHHC-type zinc finger family protein (.1) Potri.008G091700 [exp] 114 / 5e-27 AT1G69420 626 / 0.0 DHHC-type zinc finger family protein (.1.2) Potri.010G163200 [exp] 110 / 1e-25 AT1G69420 563 / 0.0 DHHC-type zinc finger family protein (.1.2) Potri.015G101900 [exp] 49 / 5e-06 AT3G26935 466 / 2e-162 DHHC-type zinc finger family protein (.1) Potri.001G070100 [exp] 49 / 5e-06 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [flax] [poplar] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10009971 pacid=23176656 polypeptide=Lus10009971 locus=Lus10009971.g ID=Lus10009971.BGIv1.0 annot-version=v1.0 ATGGCTGGCAGCGCCCCCTCCACCCTCTCCAGTTTCCTAGTCGTAACCTTCTACTCTTTCCTGGGACTCTTCCTCGGGAACAGAGTCGCCGAAATCACCG TCACAACCCTCTTTACAACCGCGGCGGTTTCGGTTATGTTCCTATTTATAAGATGCACAGCAATCGACCCGAGCGACAGAACCAGCGAGAAGAAGAAGAA GAAGAACCAGCCTAGACCTAAAGGCAGCGGAGGGATGTCGAATTTGAGATTCGGGTTGATTTTTCGGGAGATGGTGAAGAGAGTGTTCAGGAGGATGGAG AAGAAGATTCTGAGGACGTTCATAAGAAGGAAGTACTACTTGGATCCGTTGAAGGTGGCGGCGAATCAGATGGAGCCATTGCTTCCTTTCCCACTTGTGA TGAAGGAGGATGATTCTGCTGTTTCCCCTGACTCCAAACCTGAGGACATCTCTTTCTGCTCCTTGTGCGATTTCGAGGTGAAGAAACACAGCAAGCATTG CAGGACTTGCAACAGGTGTGTTGAAGGATTCGACCACCATTGCAGGTTAATTATAGAAGGAGGGACAGCAATTGCCATATTCATCAGATGCTTCACTGAC AAGGAAGGCATAGAGAAGGAGCTTGAGACTAGGCTGCATTTGGAGTTTCCTAGACCTGTCCTTGCCACCATTGCGGTGCTGATGGTGTTGATGACAGTGT ATAGCTGTGCAGCCATGGGTCAACTCTTCTTCTTTCATGTAGTTCTTATCCGCAAGGGGATGAGAACTTATGACTATATCCTGGCTATGAGAGGTGTGAC TGAATCACTGGATCTAGAAGACGAAGAAGAAGAAGATGATGATGCATTTGATGATTCGGATTTCTCTTCAGATTCTGATTGTGATTCTCCCAAGAAGATG TACAATTGCAAGTCCATCTGTGGACAACATCAACAGAACTCAAGAAGGTTGTCCATCAGAATAGACACAGTTCCCGATCCTACTTCCGACTCAAACACCA AAAAGCAAGGCTTCCAAGTAAGCATCAATCCATGGAAGCTACTTAAAATGAGCAGAGAAAAGGCTGTCCTTGCAGCTGAGAAAGCCAAAGAAAGGCTCAG GAATCAAAACCCAGTAGTGGAACAACAAGAAGAAGATTCCTTGAGGCCATTACCACTGGAGACCAAATGTGGTCCATCCATGAACACTAATGCTAAGGGA ACAACGATCGGCACATCATCGCCAGGAAAGTTTTCCAGCCCCAGAAGGCGGTTTTCTTCAGGGTCTCCAGCGAGGATTGTTCCATCTCCGATGCAGAAGA AATACAGAAGCAGCTTTGACTTGAAGCTTACTGATGTTTCCAAGGAGCTGGAAACCTATATTTCCAAACAGGTTTTGTGTTCTGTAATTAAGAAAGATGC TTCTGATGCATCTTCTCCAAGATCATGA
AA sequence Show only first row Show all	>Lus10009971 pacid=23176656 polypeptide=Lus10009971 locus=Lus10009971.g ID=Lus10009971.BGIv1.0 annot-version=v1.0 MAGSAPSTLSSFLVVTFYSFLGLFLGNRVAEITVTTLFTTAAVSVMFLFIRCTAIDPSDRTSEKKKKKNQPRPKGSGGMSNLRFGLIFREMVKRVFRRME KKILRTFIRRKYYLDPLKVAANQMEPLLPFPLVMKEDDSAVSPDSKPEDISFCSLCDFEVKKHSKHCRTCNRCVEGFDHHCRLIIEGGTAIAIFIRCFTD KEGIEKELETRLHLEFPRPVLATIAVLMVLMTVYSCAAMGQLFFFHVVLIRKGMRTYDYILAMRGVTESLDLEDEEEEDDDAFDDSDFSSDSDCDSPKKM YNCKSICGQHQQNSRRLSIRIDTVPDPTSDSNTKKQGFQVSINPWKLLKMSREKAVLAAEKAKERLRNQNPVVEQQEEDSLRPLPLETKCGPSMNTNAKG TTIGTSSPGKFSSPRRRFSSGSPARIVPSPMQKKYRSSFDLKLTDVSKELETYISKQVLCSVIKKDASDASSPRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01730			DHHC-type zinc finger family p...		Lus10009971 [exp]	0	1
AT5G51600		ATMAP65-3, PLE	PLEIADE, ARABIDOPSIS THALIANA ...		Lus10037691 [exp]	1.7	0.9683
AT1G03470			Kinase interacting (KIP1-like)...		Lus10040904 [exp]	2.8	0.9607
AT3G27330			zinc finger (C3HC4-type RING f...		Lus10022324 [exp]	3.0	0.9604
AT4G09060			unknown protein		Lus10041137 [exp]	4.7	0.9504
AT1G67820			Protein phosphatase 2C family ...		Lus10006222 [exp]	5.0	0.9576
AT1G76540		CDKB2;1	cyclin-dependent kinase B2;1 (...		Lus10021611 [exp]	6.3	0.9535
AT2G36200			P-loop containing nucleoside t...		Lus10014216 [exp]	8.2	0.9601
AT4G01730			DHHC-type zinc finger family p...		Lus10038029 [exp]	8.5	0.9567
AT1G49870			unknown protein		Lus10002116 [exp]	9.5	0.9554
AT5G66230			Chalcone-flavanone isomerase f...		Lus10014261 [exp]	11.6	0.9518

Compare expression of checked genes

Lus10009971 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.