Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62110 446 / 4e-156 Pectin lyase-like superfamily protein (.1) AT4G23820 339 / 1e-114 Pectin lyase-like superfamily protein (.1) AT4G33440 336 / 6e-113 Pectin lyase-like superfamily protein (.1) AT3G48950 329 / 2e-110 Pectin lyase-like superfamily protein (.1) AT5G41870 325 / 3e-109 Pectin lyase-like superfamily protein (.1) AT3G61490 322 / 1e-107 Pectin lyase-like superfamily protein (.1.2.3) AT4G23500 322 / 3e-107 Pectin lyase-like superfamily protein (.1) AT2G23900 310 / 9e-103 Pectin lyase-like superfamily protein (.1) AT3G16850 296 / 1e-97 Pectin lyase-like superfamily protein (.1) AT1G19170 279 / 2e-90 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038030 [exp] 649 / 0 AT3G62110 632 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10003589 [exp] 338 / 1e-113 AT4G33440 649 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10032374 [exp] 334 / 2e-112 AT4G23820 656 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10017517 [exp] 334 / 5e-112 AT4G23500 675 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10014799 [exp] 333 / 7e-112 AT4G33440 630 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10028766 [exp] 332 / 2e-111 AT3G61490 670 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Lus10023101 [exp] 327 / 6e-110 AT4G23820 642 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10007922 [exp] 325 / 1e-108 AT3G61490 743 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Lus10003890 [exp] 322 / 8e-108 AT4G23820 657 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G186900 [exp] 504 / 3e-179 AT3G62110 666 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G112100 [exp] 487 / 2e-172 AT3G62110 649 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.005G063400 [exp] 355 / 4e-120 AT4G33440 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G105800 [exp] 351 / 2e-118 AT4G33440 642 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G100000 [exp] 338 / 1e-113 AT4G23500 701 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.017G145900 [exp] 336 / 2e-113 AT3G48950 659 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G131700 [exp] 334 / 4e-112 AT3G61490 688 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Potri.002G162400 [exp] 328 / 7e-110 AT3G61490 734 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Potri.010G005500 [exp] 323 / 3e-108 AT3G16850 497 / 1e-174 Pectin lyase-like superfamily protein (.1) Potri.003G139100 [exp] 321 / 2e-107 AT4G23820 660 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10009972 pacid=23176664 polypeptide=Lus10009972 locus=Lus10009972.g ID=Lus10009972.BGIv1.0 annot-version=v1.0 ATGAAGATGCTGTTTGATGGCTCGAACTTGATCGATGTCATTATAACAGGCAACAATGGAACCATTGATGGTCAAGGAGATGTTTGGTGGAATTGGTTCC ATAACAAGACCCTCAACTACACTCGCCCTCACTTAGTCGAGCTGATTAATTCGACAGATGTGATCATCTCAAACTTGACTTTCCAAAATTCGCCTTTCTG GACAATTCATCCTGTTTATTGCAGCCAAGTTATTGTTCAAAATGTGACAATACTTGCTCCCCTGGATTCACCAAACACTGATGGAGTTGATCCAGATTCT TCCGACGATGTTTGTATCGAGGACTGTTACATTAGTACCGGTGACGATCTGATAGCCATCAAAAGCGGCTGGGACGAGTATGGTACATCGTTCGGCCGAC CTAGTAAGAACATTACCATTATTCGTCTTGTTGGACGGAGTCAATCGAGTGCAGGAATCGCGATCGGGAGTGAGATGTCCGGAGGTGTATCAGAAGTTTA CGCGGAAGATCTCCACTTTTTCGGTACCAACTCGGCCATAAGGATCAAGACTTCTCCCGGAAGGGGCGGCTATGTCAGGAACATCCACATATCAAACATG ACCTTAACCGATGTGAACCTTACAATAAGGTTGACCGGTCAATACGGGGAGCATCCGGACGAGTCCTACGATCCTAGCGCCTTACCTTCAATTGAGAAAA TCACGATCGAGAACGTCAGTGGAGTGAACATTACGCACGCAGGAGTTCTGGAGGGGATCGAAGGAGACCCATTTCTCGACATTTGCTTGTTGAATATCAC CCTAATAAGTGTTGCGTCAAAGCCTGCGTGGGAATGCACTCACATTGCGGGATATTCGGATAAGGTTACCCCAAAAACTTGTAAGCTTCTCCGGGAGGAA ATCTTCCCCGATCATTCGTCCGATTGCTATCATGTGTCGTCTCAAATTCAGAACACGAGTAGTCTTAGTAGAGGGAAGAAGCAGTGGTTTTCTTGGTAA
AA sequence Show only first row Show all	>Lus10009972 pacid=23176664 polypeptide=Lus10009972 locus=Lus10009972.g ID=Lus10009972.BGIv1.0 annot-version=v1.0 MKMLFDGSNLIDVIITGNNGTIDGQGDVWWNWFHNKTLNYTRPHLVELINSTDVIISNLTFQNSPFWTIHPVYCSQVIVQNVTILAPLDSPNTDGVDPDS SDDVCIEDCYISTGDDLIAIKSGWDEYGTSFGRPSKNITIIRLVGRSQSSAGIAIGSEMSGGVSEVYAEDLHFFGTNSAIRIKTSPGRGGYVRNIHISNM TLTDVNLTIRLTGQYGEHPDESYDPSALPSIEKITIENVSGVNITHAGVLEGIEGDPFLDICLLNITLISVASKPAWECTHIAGYSDKVTPKTCKLLREE IFPDHSSDCYHVSSQIQNTSSLSRGKKQWFSW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62110			Pectin lyase-like superfamily ...		Lus10009972 [exp]	0	1
AT3G62110			Pectin lyase-like superfamily ...		Lus10038030 [exp]	1.0	0.9368
AT3G52500			Eukaryotic aspartyl protease f...		Lus10016967 [exp]	1.7	0.9189
AT5G16730			Plant protein of unknown funct...		Lus10009550 [exp]	3.5	0.9108
AT3G48460			GDSL-like Lipase/Acylhydrolase...		Lus10033302 [exp]	4.0	0.8827
AT5G58970		ATUCP2	uncoupling protein 2 (.1.2)		Lus10040709 [exp]	4.2	0.8913
AT1G66830			Leucine-rich repeat protein ki...		Lus10017611 [exp]	5.3	0.8896
AT1G13860		QUL1	QUASIMODO2 LIKE 1 (.1.2.3.4)		Lus10036883 [exp]	5.7	0.9221
AT1G78530			Protein kinase superfamily pro...		Lus10005569 [exp]	6.2	0.8726
AT4G33580		ATBCA5	A. THALIANA BETA CARBONIC ANHY...		Lus10015833 [exp]	8.0	0.8608
AT5G01890			Leucine-rich receptor-like pro...		Lus10014174 [exp]	9.7	0.9071

Compare expression of checked genes

Lus10009972 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.