Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62130 655 / 0 LCD L-cysteine desulfhydrase, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT5G26600 566 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) AT1G08490 52 / 5e-07 ATSUFS, SUFS, ATCPNIFS, ATNFS2, CPNIFS chloroplastic NIFS-like cysteine desulfurase (.1) AT5G65720 42 / 0.001 ATNIFS1, NIFS1 ,ATNFS1 NITROGEN FIXATION S HOMOLOG 1, ARABIDOPSIS THALIANA NITROGEN FIXATION S \(NIFS\)-LIKE 1, nitrogen fixation S (NIFS)-like 1 (.1), nitrogen fixation S (NIFS)-like 1 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038033 [exp] 911 / 0 AT3G62130 657 / 0.0 L-cysteine desulfhydrase, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10031445 [exp] 556 / 0 AT5G26600 608 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Lus10001514 [exp] 551 / 0 AT5G26600 588 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Lus10031670 [exp] 69 / 4e-12 AT1G08490 691 / 0.0 chloroplastic NIFS-like cysteine desulfurase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G187200 [exp] 690 / 0 AT3G62130 685 / 0.0 L-cysteine desulfhydrase, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.014G112700 [exp] 680 / 0 AT3G62130 682 / 0.0 L-cysteine desulfhydrase, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.005G003000 [exp] 595 / 0 AT5G26600 650 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.013G002400 [exp] 591 / 0 AT5G26600 647 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.009G066000 [exp] 57 / 2e-08 AT1G08490 683 / 0.0 chloroplastic NIFS-like cysteine desulfurase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00266 [flax] [poplar] Aminotran_5 Aminotransferase class-V
Representative CDS sequence Show only first row Show all	>Lus10009974 pacid=23176668 polypeptide=Lus10009974 locus=Lus10009974.g ID=Lus10009974.BGIv1.0 annot-version=v1.0 ATGGAAACCGAAGATCCTCGGAACGGCGATTCCAATCACCACCTCGTGAATCCGATCAAGAAGAAGCCCCGGCTCCTCTTGCACACTCGTTCCTCGTCGT CATCATCACCATCTCCATCAGTCGCCGACGAGTTCGCTCACCACGAACCAGGCGTGGCGAGACTCAACAACGGGAGCTTCGGGAGCTGTCCAGGATCGGT ACTCGCTTCGCAGAGGGATTGGCAGCTCAAGTTCCTCCGCCAGCCGGACGATTTCTACTTCCACACTCTCCGGCAAGGCATACTCCGCTCCCGCACTCTC GTTAAGGAGCTGGTGAACGCTGATGACGTCGAAGAGATTTCGCTCATCGACAACGCGACCACGGGTGCGGCGATAGTGCTTCAGCAAATCGGCCGCGCAT TCGCGGAAGGCAGGTTCGATAAAAACGACGCTGTGCTGATGTTCCACTGTGCTTTCCAAGCTGTGAAGAAATCGATGGAGGCATACGTCCGGCGGGCGGG CGGCTCTGTAGTCGAGGTTCAATTGCCGTTTCCGGTACGGTCCGATGAAGAGATCATTTCGGAGTTTAGGAAGGGTTTGGAGAAGGCTAAATCTAAAGGT AGGAAAGTAAGGTTAGCGATTATTGATCATATAACGTCGATGCCGTCTGTTGTGACTCCGTTGAGAGAGCTCGTTAGGATTTGCAGGGAAGAAGGAGTTG ACCAAGTCTTCGTAGATGCTGCTCATGCTATAGGCAGCGTTGAAGTTGATGTGAAGGAGATTGGGGCTGATTTCTACGTGAGTAATCTTCACAAATGGTT TTTCTGCCCACCATCTGTTGCGTTTTTGTACTGCAAGAAATCAATTTCGTCATCTGATGCTCATCACCCAGTGGTCTCGCACGAATATGGCAATGGACTA GCAATCGAGAGTTCGTGGATTGGAACACGGGATTACAGCTCGCAGTTGGCTGTACCGGCAGCTTTAGAGTTTGTCAATTCGTTCGAGGGAGGGATTAGAG GGATTATGAAGAGGAACCATGATGCGGTTGTGAAGATGGGGGAAATGTTGGTCGAATCGTGGGGGACGAATTTCGGTGCGCCACCTGAGATGTGTGCATC CATGGTGATGGTAGGCTTGCCTTCAAGGTTGAATGTTACCGGTGATGATGATGCTTTGCGGTTAAGGTCGCATTTACGAGCTAATTGCGGGATTGAGGTT CCTATACACTACCAAGCTCCAAGAGACGGTGAAGAGGGTGTAAAGGATAGTTATGGGATCATAGCAGCCTATGTAAGGATTTCCCATCAAGTTTACAACA CAGTGGACGAATATTACAAGCTCAGGGATGCGATAAATCAGACTGTCGAAGACAAGAGAACATGCAAGACTCTTCCGACAGAGTGA
AA sequence Show only first row Show all	>Lus10009974 pacid=23176668 polypeptide=Lus10009974 locus=Lus10009974.g ID=Lus10009974.BGIv1.0 annot-version=v1.0 METEDPRNGDSNHHLVNPIKKKPRLLLHTRSSSSSSPSPSVADEFAHHEPGVARLNNGSFGSCPGSVLASQRDWQLKFLRQPDDFYFHTLRQGILRSRTL VKELVNADDVEEISLIDNATTGAAIVLQQIGRAFAEGRFDKNDAVLMFHCAFQAVKKSMEAYVRRAGGSVVEVQLPFPVRSDEEIISEFRKGLEKAKSKG RKVRLAIIDHITSMPSVVTPLRELVRICREEGVDQVFVDAAHAIGSVEVDVKEIGADFYVSNLHKWFFCPPSVAFLYCKKSISSSDAHHPVVSHEYGNGL AIESSWIGTRDYSSQLAVPAALEFVNSFEGGIRGIMKRNHDAVVKMGEMLVESWGTNFGAPPEMCASMVMVGLPSRLNVTGDDDALRLRSHLRANCGIEV PIHYQAPRDGEEGVKDSYGIIAAYVRISHQVYNTVDEYYKLRDAINQTVEDKRTCKTLPTE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62130		LCD	L-cysteine desulfhydrase, Pyri...		Lus10009974 [exp]	0	1
AT3G62130		LCD	L-cysteine desulfhydrase, Pyri...		Lus10038033 [exp]	1.0	0.8572
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Lus10024723 [exp]	3.0	0.7509
AT5G42940			RING/U-box superfamily protein...		Lus10010372 [exp]	4.5	0.7545
AT5G62050		ATOXA1, OXA1AT,...	HOMOLOG OF YEAST OXIDASE ASSEM...		Lus10001427 [exp]	9.7	0.6101
AT1G60670			Protein of unknown function (D...		Lus10030566 [exp]	11.5	0.7242
AT1G31814		FRL2	FRIGIDA like 2 (.1)		Lus10042965 [exp]	19.0	0.6959
AT2G30120			unknown protein		Lus10042267 [exp]	27.3	0.6843
AT3G06670			binding (.1.2)		Lus10037742 [exp]	29.7	0.7222
AT2G35920			RNA helicase family protein (....		Lus10009660 [exp]	32.1	0.7235
AT1G21840		UREF	urease accessory protein F (.1...		Lus10039022 [exp]	32.9	0.6948

Compare expression of checked genes

Lus10009974 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.