Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48300 82 / 1e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038034 [exp] 258 / 1e-84 AT1G48300 92 / 3e-21 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G003200 [exp] 94 / 9e-22 AT1G48300 125 / 2e-33 unknown protein Potri.002G187300 [exp] 90 / 3e-20 AT1G48300 98 / 2e-23 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009975 pacid=23176673 polypeptide=Lus10009975 locus=Lus10009975.g ID=Lus10009975.BGIv1.0 annot-version=v1.0 ATGGCTACGGCGCAAAGAATGATCGCTTCTGTCGGTGGCTCGACGGCCATTCGATTCTTCGACGGTGTGGATTCTCGTGCCGGCGATCGGACCGTCCGCG GAGTTCGATTTGGCGCGAGGAAATGGAAGGTCGGCGCGCTACGCCGTGAGGAGGAATTCGCCGATTCCCAGCATACGCAGTACTACGTCTCTCCGCGGGC AGGATGCGAGGAGAAGAAGCTGAAGGAAGTGAAAAAGGAGAAGAGTAAGAAGAAGCTGAAGTTGTTGAAGAGACTTTCCGCCGATCTTCAGATGTTCGTT TCCGGGAGGGAGGAGGAGGACGGTGGAGGAGTGATTATCTCGTCATTGCAGGAAGCGCAGAAGCTTCTGCTTGCAGAGCTGGAGAAGTTGAGATCGGAGG AGATGGAGAAGAAGAAAATGGAGGAGAGAGAGATGAAATCGTCCGACTCCGAATCGTCGTCCTCGAGTTCATCAGAGTCGAGCGACAGTGATGATTGCGG GAACAACGCAATGGTGATGAAATCGCAGCGCAAGATATCAAGTTCGAATTACGTTTCAATTCCACAAGAATCGAGCTCCATCGGAACTCTCCCGGCCATT GAAGTTCAAGCAGAAGAGGTGCGTGATTCCATCGTCTCCCTCGTCCAGTGTGGAATTACCACCGCCCGGGAACAGAGCAACAGGAAGATCGAGGTGTGTA TGGGGGGGAAGTGCAAGAAGCAGGGAGCGATGGCGTTGATGGAGGATTTCCAGAGGAAAGTAGGAGAAGGAGCAGCCATGGTTGTCACCTGCAAGTGTAT GGGGAAATGCAAGAACGCCCCAAACGTTAGGGTTTCGTCTTCGTCCTCCAGCAGCTTGGAAGATGGTCTTCTGTGCATCGGGGTAGGGTTGGAAGATGTT GACGCCATTGTTGCTAAGCTGATGGCAAGTAGCAATGACCACTACCTGCCAGCCATGGCGCCTTAA
AA sequence Show only first row Show all	>Lus10009975 pacid=23176673 polypeptide=Lus10009975 locus=Lus10009975.g ID=Lus10009975.BGIv1.0 annot-version=v1.0 MATAQRMIASVGGSTAIRFFDGVDSRAGDRTVRGVRFGARKWKVGALRREEEFADSQHTQYYVSPRAGCEEKKLKEVKKEKSKKKLKLLKRLSADLQMFV SGREEEDGGGVIISSLQEAQKLLLAELEKLRSEEMEKKKMEEREMKSSDSESSSSSSSESSDSDDCGNNAMVMKSQRKISSSNYVSIPQESSSIGTLPAI EVQAEEVRDSIVSLVQCGITTAREQSNRKIEVCMGGKCKKQGAMALMEDFQRKVGEGAAMVVTCKCMGKCKNAPNVRVSSSSSSSLEDGLLCIGVGLEDV DAIVAKLMASSNDHYLPAMAP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48300			unknown protein		Lus10009975 [exp]	0	1
AT1G76070			unknown protein		Lus10021840 [exp]	1.7	0.8935
AT4G09760			Protein kinase superfamily pro...		Lus10028728 [exp]	4.9	0.8258
AT5G17680			disease resistance protein (TI...		Lus10041060 [exp]	5.7	0.8335
AT1G14860		ATNUDT18	nudix hydrolase homolog 18 (.1...		Lus10034598 [exp]	6.9	0.8180
AT4G09760			Protein kinase superfamily pro...		Lus10028696 [exp]	9.8	0.8113
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10030952 [exp]	9.9	0.7557
AT1G53050			Protein kinase superfamily pro...		Lus10033684 [exp]	12.0	0.8174
AT3G16720		ATL2	TOXICOS EN LEVADURA 2 (.1)		Lus10037490 [exp]	15.3	0.8136
AT2G28305		ATLOG1	LONELY GUY 1, Putative lysine ...		Lus10021462 [exp]	18.5	0.7981
AT4G30780			unknown protein		Lus10035819 [exp]	18.5	0.7957

Compare expression of checked genes

Lus10009975 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.