Plant FIBer expression Database

Lus10009976 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G62140 202 / 9e-66 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038035
[exp]
323 / 8e-114 AT3G62140 211 / 1e-69 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G112900
[exp]
208 / 3e-68 AT3G62140 201 / 1e-65 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF10187 FAM192A_Fyv6_N FAM192A/Fyv6, N-terminal domain
Representative CDS sequence
>Lus10009976 pacid=23176675 polypeptide=Lus10009976 locus=Lus10009976.g ID=Lus10009976.BGIv1.0 annot-version=v1.0
ATGGAGGAAGAATCAGCTGCTCCGATACGGTTAATGAATTTCGTCTCTGAAGAACAGTTAGATGAAGCGAAGAAAACGAGAGGGGAGCGAGTCGAGGACG
GCACTGCTCAGAGAGATCGGCCTCTCCACGAAATATTGAGGGAGAACAAAGACAAGAAGGATGCTGAATTCAATGAACGGTTCAAGCACAGGCCACCGAA
AGCTTTGGATGAAGATGAGACTGAGTTTCTTGACAATCTGGAGATGTCGAGGAAGCAGCTTGAACGACAAGTTGCAGTTGAGGAAGCTGAGCAGCTTCGA
AGTTTTCAGGCAGCAGTTGCAGCACAGTCCAGCATTGCTCACGAATTGGAAGAAAAACAACTTCCTCCGCCAATAAAACAAGAGCAGAAGCCAGCGGCGG
GAAAGAAGAATCAGCCATATCGTCCAAACGTAATAATCAAAGTCAAGCCTCCTCCAGCAAAGAAAGCAAAGACCGAGAGTGCTGCCAATGAAGCTTCAAC
AACACCTTCAGTGAATGGGAAATCTTCGGACCAAGGACAGAATCCAACTGGCAGCGTCGACAAGTCTAGTGACGTCGTGGTGAAAACAGGTCTTGTTGTG
TACAGTGACGAAGAGAGTGATGACGAAGATTCATAG
AA sequence
>Lus10009976 pacid=23176675 polypeptide=Lus10009976 locus=Lus10009976.g ID=Lus10009976.BGIv1.0 annot-version=v1.0
MEEESAAPIRLMNFVSEEQLDEAKKTRGERVEDGTAQRDRPLHEILRENKDKKDAEFNERFKHRPPKALDEDETEFLDNLEMSRKQLERQVAVEEAEQLR
SFQAAVAAQSSIAHELEEKQLPPPIKQEQKPAAGKKNQPYRPNVIIKVKPPPAKKAKTESAANEASTTPSVNGKSSDQGQNPTGSVDKSSDVVVKTGLVV
YSDEESDDEDS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G62140 unknown protein Lus10009976
[exp]
0 1
AT2G39740 HESO1 HEN1 suppressor 1, Nucleotidyl... Lus10030154
[exp]
3.3 0.9209
AT2G21150 XCT XAP5 CIRCADIAN TIMEKEEPER, XAP... Lus10007576
[exp]
4.5 0.9006
AT3G62140 unknown protein Lus10038035
[exp]
4.6 0.9119
AT1G17330 Metal-dependent phosphohydrola... Lus10040985
[exp]
5.3 0.9060
AT1G72175 RING/U-box protein with domain... Lus10020349
[exp]
6.0 0.9133
AT5G59460 scarecrow-like transcription f... Lus10001576
[exp]
6.5 0.8727
AT3G48340 CEP2 cysteine endopeptidase 2, Cyst... Lus10033631
[exp]
7.7 0.8842
AT4G22740 glycine-rich protein (.1.2) Lus10024563
[exp]
8.0 0.8925
AT5G62950 RNA polymerase II, Rpb4, core ... Lus10039583
[exp]
14.4 0.8662
AT5G09960 unknown protein Lus10006803
[exp]
15.3 0.8955

Lus10009976 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.