Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17160 74 / 1e-13 unknown protein AT3G03130 72 / 3e-13 unknown protein AT1G76740 55 / 2e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038036 [exp] 762 / 0 AT5G17160 95 / 3e-20 unknown protein Lus10028114 [exp] 49 / 6e-06 AT1G76740 76 / 2e-14 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G081600 [exp] 108 / 1e-24 AT3G03130 131 / 4e-32 unknown protein Potri.019G046801 [exp] 74 / 2e-13 AT3G03130 86 / 3e-17 unknown protein Potri.002G066450 [exp] 49 / 1e-05 AT1G76740 64 / 1e-09 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009977 pacid=23176681 polypeptide=Lus10009977 locus=Lus10009977.g ID=Lus10009977.BGIv1.0 annot-version=v1.0 ATGGAAGGATTCGATTTCCACACCCTCTCGAGGAAGGACCTCCAAGCTCTCTGCAAGCTCAACAAGATCCCCGCCAACATCACCAATGTCGCCATGGCCG ACTCCCTTCAAGCTCTCCCCCAGGTGGAAGGACTCGACGAGTTGCTTCAAACGCTCAGCTCCGATCAGCAAACTGTGCCTGGAACCCCGGCTGTTTCCCA ATCAGCTCGCAGAAGTGCGGTTAGGAGAAACCCTACCGCTGTTAAGGAGCCGGAAACACTGACTCGAACTCGACGCACCACTAAGAAAGCGGCAGCTCCA GAGGCTGGTGGATGTCCTCCTCAAACTCCTGCAACGGCGGTAAGCAGGAGGAAAGTGTCATCAGGGACTGAAACTAGCAAATTCGATTTGGAGGCTGGAG AAGAAGTATCATCCGTTCAGAAGGCATACAGCACTAGGCGGTCAGTGAGGCTGTTAGGGAAGAGCATGGGGAAAATGTCCTTGAAGGAAACGGATGTTCA ACCAATTGAAGTAGCAGAAGCTGGAGCTGATTCGTCAATTGATGTTAGCGAGACATCTGAGGAAATCAATGACTCTTGTCGGAATCTGGACTCTTCGATG GAGAATGAAACTGATAGCAAAGATGGGGTGGAAGCAAATGATGAAATCAATAGCTTGATTAAGGAGACCTCTGATGAAACCGATGGCAACCTGGACTCGT TGATGAAGCATGAAACTGATCATGCAAATGATGAAATCAATAGCTTGAATGAAGTTCCGAGCTTAGATACTGAAGCTGGGAAGGATAAAGAGAACTCCGA TGATCTGGACCTTCAGAAGGCTAACGACACAGAAAATGTAGCAGCTGATCTGACTCTGACTCATGTCACTGATGAGAGTCTGGTGGAATCCAGTAATCCT GATGCTTCCATAGTCTACAATTCAATGGATACAGAAACCGAAATGAGTCATGAACTTGATGCCAAGAACATTGATTCCAATGCTGAGATGGAGACTGGTG AGAGTTCTGACGAGAGGTTAATAGTGGAACAACAAGAGACCATTGTTGAAAGTGATTCCCTTGCAGAACCAGATGTCCTGACTCCTCCAATAAGACCTAC TTTGAGATCAATAATTGTAATGGGCTCAAACAGCCACCAACTTCACACTCCTGCTCCACGATCGGTTAAAGATAGCTCTGCTGCTGTCGATACTGAACCA GAATCAGTTGAGAAGATATCTGACGGCGATGTTGAAGATGATAACATGGAAGAAGTTTCATCTTCCGCAGCTGTTAACCAACTTCAGGCTCCTGCTCCAC AAGTGATTGAAGATAGCTCGACTGATGCTGAACCAGAAACCTTTGAGAAGGCATCTGAAGGAGATGTTGAAGTTGATAACATGGAAGAAGTCTCATCTTC CCCAGCTGTTAACCAACTTCAGGCCTGTGCTCCACAAGTGGTTGAAGATAGCTCTGTTGCTGAACCTGAAACCGTTGAGAAGGCATCTGAAGGAGATGTT GAAGTTGATAACATGGAAGAAGTCTCTTCTTTCGCAGCAGTTAACCAAATCGTCAGCAAGAAGGAGGAGGAATTGGATGTGATGCCTTCGGAAATGGTCA TCAACAAGGAGAACATGAACAAGAAGAAGAAGAAGGAATTCGTTGACATGAGTCTGACGCAGTTGACCAAGATGCTGAAAGAAAAGCTGAAGCTCAAAGC AGATGAGAAAACTGAGAAGAGACAGGCATTGGCTGAGAACATTAACAATGGCTGCTGA
AA sequence Show only first row Show all	>Lus10009977 pacid=23176681 polypeptide=Lus10009977 locus=Lus10009977.g ID=Lus10009977.BGIv1.0 annot-version=v1.0 MEGFDFHTLSRKDLQALCKLNKIPANITNVAMADSLQALPQVEGLDELLQTLSSDQQTVPGTPAVSQSARRSAVRRNPTAVKEPETLTRTRRTTKKAAAP EAGGCPPQTPATAVSRRKVSSGTETSKFDLEAGEEVSSVQKAYSTRRSVRLLGKSMGKMSLKETDVQPIEVAEAGADSSIDVSETSEEINDSCRNLDSSM ENETDSKDGVEANDEINSLIKETSDETDGNLDSLMKHETDHANDEINSLNEVPSLDTEAGKDKENSDDLDLQKANDTENVAADLTLTHVTDESLVESSNP DASIVYNSMDTETEMSHELDAKNIDSNAEMETGESSDERLIVEQQETIVESDSLAEPDVLTPPIRPTLRSIIVMGSNSHQLHTPAPRSVKDSSAAVDTEP ESVEKISDGDVEDDNMEEVSSSAAVNQLQAPAPQVIEDSSTDAEPETFEKASEGDVEVDNMEEVSSSPAVNQLQACAPQVVEDSSVAEPETVEKASEGDV EVDNMEEVSSFAAVNQIVSKKEEELDVMPSEMVINKENMNKKKKKEFVDMSLTQLTKMLKEKLKLKADEKTEKRQALAENINNGC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03130			unknown protein		Lus10009977 [exp]	0	1
AT4G32830		ATAUR1	ataurora1 (.1)		Lus10005487 [exp]	1.4	0.9745
AT5G17160			unknown protein		Lus10038036 [exp]	1.4	0.9758
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10006851 [exp]	3.0	0.9741
AT3G11830			TCP-1/cpn60 chaperonin family ...		Lus10008406 [exp]	3.9	0.9643
AT3G44050			P-loop containing nucleoside t...		Lus10008438 [exp]	4.0	0.9722
AT4G15830			ARM repeat superfamily protein...		Lus10034168 [exp]	4.2	0.9614
AT3G01840			Protein kinase superfamily pro...		Lus10022345 [exp]	4.4	0.9431
AT1G10780			F-box/RNI-like superfamily pro...		Lus10001614 [exp]	4.9	0.9523
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Lus10019336 [exp]	6.6	0.9404
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Lus10010483 [exp]	6.7	0.9519

Compare expression of checked genes

Lus10009977 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.