Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47010 647 / 0 unknown protein AT1G17030 574 / 0 unknown protein AT4G09965 91 / 8e-21 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007453 [exp] 644 / 0 AT2G47010 653 / 0.0 unknown protein Lus10000888 [exp] 347 / 7e-115 AT2G47010 320 / 7e-105 unknown protein Lus10024442 [exp] 218 / 1e-67 AT1G17030 231 / 4e-73 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G187700 [exp] 684 / 0 AT2G47010 690 / 0.0 unknown protein Potri.004G062000 [exp] 597 / 0 AT1G17030 648 / 0.0 unknown protein Potri.019G076900 [exp] 578 / 0 AT2G47010 587 / 0.0 unknown protein Potri.001G381400 [exp] 572 / 0 AT1G17030 706 / 0.0 unknown protein Potri.001G381600 [exp] 571 / 0 AT1G17030 698 / 0.0 unknown protein Potri.001G382000 [exp] 306 / 1e-100 AT1G17030 389 / 1e-133 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009978 pacid=23176680 polypeptide=Lus10009978 locus=Lus10009978.g ID=Lus10009978.BGIv1.0 annot-version=v1.0 ATGTCGCCGACGGCGGACCACTTCCGTCGTTCAAACCTCCTCTCTTTGATTCCACTTCTCGTTTTGACTTGTTGCACTCTTAGTACTTCATCACATGTTT CAGCTGCCGGCGTCGGTTCCGGAAAACTAAAAGGGAGATCTGCACTTGGAGATCCGGGAATGAAAAGGAGCGGATTGAGAGTCGCATTCGAGGCTTGGAA CTTCTGCAACGAAGTCGGCGCCGAAGCTCCCCATATGGGCAGCCCTCGCGCCGCCGATTGCTTCGACCTCCACCGGAAGCACCACCACCACGACGGCAGC CGCTCCGGTTTCAAATGGAACCGCACCGTTTTGACTGATGTATTAGCTCTCAAACACAAGGTCAGCAAGAAAGACAACAAACTCGGCGTAGGAAAGCCGT TCCCAGGCCTGCCGTCCAAGCTTCAAAACGACGCCGATCTGTACACGGTCTTCAAGGAGTCATACCTCGGCAGTCTCTGCGAAGTCCCCGATTACCCGAC TCCGTGGCACTTCTGGATGGTAATGCTAAAAAATGGAAACTACGACTCTACTTCGGGTCTCTGCCCCGAAAACGGCAAACCGGGCAAACCGTTCGCTCCG GGTAGATTCCCGTGTTTCGGGGCCGGTTGCATGAACCAACCGAGCCTGATCCATGACCGAACTGTGATCGACCCGGAGTCGGGAACGATGAGCGGGAGCT TCAGTGGAAGTTACGATTTGGATATGGATGTGTCGAATGGTCCGGTGAAGAATGGTTCGTATTACGAAGTGAAGTGGGAGAAGAGAATTGGGGCAGGATG GTCTTTTCATCATAAGCTTCATACGAGTAAGAAATATCCATGGCTTATGCTTTACCTTAGAGCTGATGCTACCAAGGGGCTCTCTGGTGGGTATCACTAT GGCACCAAAGGCATCATGAAAACACTACCGGAGTCGCCAAACTTCAGGGTGAAGCTAACCCTAGACATAAAGAAAGGAGGAGGACCACAGAGCCAATTCT ACATGATCGACATCGGCAGCTGCTGGAAGAACGACGGCTCCCCCTGCGACGGCGACGTCATCACCGACGTCACCCGCTACTCCGAGTTCGTGATCAACCC AGAAACCGAACCATGGTGCCAACCAAACCGAACCTCCCACTGCCCACCCTACCACATCACTCCAAACGACACGATCATCTACCGAAACGACACCAAGAAG TTCCCCTACAGCGCGTATCACCTCTGGTGTGGGCCCGGGAACGCCAAGCACTTGGAGGAGCCGTTCAACACGTGCGACCCGTATAGCAACCCGAATGCCC AGGAGTTGCTCCAGCTTCTGCCCCACCCGGTTTGGGGCGGGTATGGGTACCCGACTAGAAAGGGTGAAGGGTGGGTCGGGGACCCGAGGAGCTATGATTT GAATACGGGTGGTTTGAGTCAGAGGCTGTACTTTTATCAAGATCCTGGGACGGCGCCGGCGAGGAGGATTTGGACGTCGGTGGATGTTGGGACGGAGATT TACATTAGTGATAAAGATCAAGTTGCCGAATGGGTTCTTAGCGATTTCGATGTTGTTCATACCTGA
AA sequence Show only first row Show all	>Lus10009978 pacid=23176680 polypeptide=Lus10009978 locus=Lus10009978.g ID=Lus10009978.BGIv1.0 annot-version=v1.0 MSPTADHFRRSNLLSLIPLLVLTCCTLSTSSHVSAAGVGSGKLKGRSALGDPGMKRSGLRVAFEAWNFCNEVGAEAPHMGSPRAADCFDLHRKHHHHDGS RSGFKWNRTVLTDVLALKHKVSKKDNKLGVGKPFPGLPSKLQNDADLYTVFKESYLGSLCEVPDYPTPWHFWMVMLKNGNYDSTSGLCPENGKPGKPFAP GRFPCFGAGCMNQPSLIHDRTVIDPESGTMSGSFSGSYDLDMDVSNGPVKNGSYYEVKWEKRIGAGWSFHHKLHTSKKYPWLMLYLRADATKGLSGGYHY GTKGIMKTLPESPNFRVKLTLDIKKGGGPQSQFYMIDIGSCWKNDGSPCDGDVITDVTRYSEFVINPETEPWCQPNRTSHCPPYHITPNDTIIYRNDTKK FPYSAYHLWCGPGNAKHLEEPFNTCDPYSNPNAQELLQLLPHPVWGGYGYPTRKGEGWVGDPRSYDLNTGGLSQRLYFYQDPGTAPARRIWTSVDVGTEI YISDKDQVAEWVLSDFDVVHT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47010			unknown protein		Lus10009978 [exp]	0	1
AT1G15780			unknown protein		Lus10015323 [exp]	17.3	0.6548
AT1G09810		ECT11	evolutionarily conserved C-ter...		Lus10037364 [exp]	26.1	0.6319
AT1G71800		CSTF64	cleavage stimulating factor 64...		Lus10028714 [exp]	149.7	0.5358
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10033859 [exp]	149.7	0.5711
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Lus10009998 [exp]	154.7	0.5475

Compare expression of checked genes

Lus10009978 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.