Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48385 107 / 8e-24 FRIGIDA-like protein (.1) AT5G27230 82 / 1e-15 Frigida-like protein (.1) AT1G31814 79 / 4e-15 FRL2 FRIGIDA like 2 (.1) AT5G16320 72 / 6e-13 FRL1 FRIGIDA like 1 (.1) AT5G27220 73 / 1e-12 Frigida-like protein (.1) AT4G00650 55 / 1e-07 FLA, FRI FLOWERING LOCUS A, FRIGIDA-like protein (.1) AT3G22440 52 / 2e-06 FRIGIDA-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038038 [exp] 1373 / 0 AT5G48385 102 / 2e-22 FRIGIDA-like protein (.1) Lus10004132 [exp] 347 / 5e-108 AT5G48385 89 / 2e-18 FRIGIDA-like protein (.1) Lus10033828 [exp] 300 / 5e-85 AT5G27230 150 / 2e-36 Frigida-like protein (.1) Lus10004131 [exp] 182 / 5e-47 AT5G48385 72 / 8e-13 FRIGIDA-like protein (.1) Lus10042965 [exp] 122 / 2e-28 AT1G31814 237 / 8e-72 FRIGIDA like 2 (.1) Lus10032466 [exp] 118 / 2e-27 AT1G31814 227 / 6e-68 FRIGIDA like 2 (.1) Lus10001723 [exp] 115 / 5e-26 AT5G48385 / FRIGIDA-like protein (.1) Lus10002146 [exp] 100 / 2e-21 AT5G48385 640 / 0.0 FRIGIDA-like protein (.1) Lus10008744 [exp] 100 / 2e-21 AT5G48385 629 / 0.0 FRIGIDA-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G044000 [exp] 218 / 1e-59 AT5G27230 125 / 2e-29 Frigida-like protein (.1) Potri.005G044100 [exp] 211 / 9e-58 AT5G27230 116 / 1e-26 Frigida-like protein (.1) Potri.005G043900 [exp] 212 / 1e-56 AT5G27230 119 / 3e-27 Frigida-like protein (.1) Potri.007G050800 [exp] 114 / 6e-26 AT5G48385 296 / 6e-93 FRIGIDA-like protein (.1) Potri.002G206200 [exp] 111 / 3e-25 AT5G16320 220 / 1e-65 FRIGIDA like 1 (.1) Potri.014G175200 [exp] 106 / 1e-23 AT5G48385 629 / 0.0 FRIGIDA-like protein (.1) Potri.002G239900 [exp] 101 / 5e-22 AT5G48385 655 / 0.0 FRIGIDA-like protein (.1) Potri.005G044200 [exp] 98 / 1e-20 AT5G27220 129 / 5e-30 Frigida-like protein (.1) Potri.015G110066 [exp] 55 / 1e-07 AT4G00650 140 / 5e-39 FLOWERING LOCUS A, FRIGIDA-like protein (.1) Potri.008G153000 [exp] 54 / 5e-07 AT3G22440 710 / 0.0 FRIGIDA-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07899 [flax] [poplar] Frigida Frigida-like protein
Representative CDS sequence Show only first row Show all	>Lus10009979 pacid=23176690 polypeptide=Lus10009979 locus=Lus10009979.g ID=Lus10009979.BGIv1.0 annot-version=v1.0 ATGAAGGGAGAAGCCAATGTGGGAATATCCCTCACACTCGGCGGCACCGCAGAGTATCCGCCGCCGACGCCAACACCCGCGACGGAGATGCAGTCTCGTC TCAGGGAAACAATCGACCAGGTCCGCCACCACGCGTCCTGGATTGACTCCGTCGCCGCTTCTCTCGAATCCACAGTCTCCGCCGCCGTGGAAGCCGCCGT GGAAGCTAGGTCCAACGAGTTGCGGTTAGCAGAGGAGAACAATGCGAACGAGCGGCTGAAGGAGAAGACGCTGGAGTTGGAAGCGAAGGAGAATACATTC AATCTGCGCATGAAGAACGAGATCGAGTTGCTGCAGTTGGAGAAGGAAGTTATCGTGAAGAAACTGCAGGAGCTTGAGGAAAAGGAAGAAGAGTTCGAGT CGCTCGGGAGTTACGTGGAGGAGAGAGCGATTCAAGTTCGGGAGATCGAGGAGCAGATGGAAGACCGGCGGAAGGAAGTTGAAGCGAAGGAGAAGGAGAT TGAAGAATGCTTCCGTCTGTTCCAGTTGAGGGAGAAAGGATTCGAGGAGCAATTGGCGGAGTTCAAACTGAAACAGTCGGAATTCCAGGTTCGTTTGACT GAACTTGACGCTAGAGAGAATCAATTCAAGGAAATCGAATCAAAACTTGTGAAACGGATCGAAGAGGCTGAACTTAGGGAGAAGCTGCTTGAAGAGGAGC GATTGGCGGAGTTCAAACTGAAACAGTCGGAATTCCAGGTTCGTTTGAGTGAACTCAATGCTAGAGAGAGTCGATTCAAGGAACTGGAATCGAAACTTGT GAAACGGATTGAAGAGGTTGAAGTTAGGGAGAAGCTGCTCGAAGAGAAGCAAAAGGAAGTTAAATCAGAAGCTGAGAAGTTAGAAGAATTGAAGAAGGAT GTAGAGTTGAAAGAGAAGCAACAGGCGGATCATTCATCCGAGGCGAACTTTAGTATTTGCGTTACAATGAGTGGTAAAGACTTGCAGATTTTCGTAAACG AACGTTCCAAGGATGGTAGCGATTCGATGAAAGACGAAGTGGAGGCAGCTCTGAAACTCTCACCAGAACCTGCAAAGCTCGTCCTGGACGCTATGGAAGG ATTCTATCCTCCACATTTGAAGATAGGAGAAGTCGAATTTGAAGAGGTCGTCATAAGGAAGAGCTGCTTGATGCTATTGGAACACTTAACAAGAATGTCG CCGGAGATCAAACAAACTGTGAGAAAAGAAGCAATGAAGCTAGCCTGTGATTGGATGACAAGGATGAAGTGTGATGCCGAACACTCCTTGGAAGTTCTAG CGCTTCTGCAACTCATGGCTGCGTATGGATTAGCATCAACATTCGACGAAGATGAGCTCATGGCTAGGGTTCGTGTCATTGCTCATTACAGCCAGGCTGC TAGGCTTCTTCAAGACCTTGGTCTTGCTAACAAGATCTCTGGTGTAATTCAAAAGCTTATTGAAAATAAGCTCCAGGATGAAGCTTACAGACTTGTTTCT GCATTTGAGTTGCACAATGAGTTCCCAAGTTTGTCACCGTGTTCGAAAGAAAATCTCGAGTCCGATGCTGTTCTTGTGTCGTCGGATACTGGTCCCATCA CTCCCGATAGGCTGATGATACCTCAATGTAGCGGAGCTAAACGTTCATGGACAGATGCTTGTGCAGATGGTAATCAAAACGACTATACCGATCTCGATCA TGCTACCTCTGCGAATTTACCTTCGCAGCAGCCAGAAATGCCGAATTTACCTCATGAGGATCCGGAAAGTTTAACCAGTGATCATCAAGCTGGTTGCACC AATCCTCTCCTCGAATTTCACCTCTCCGAAGTGGATGAGATCGAAAAGGGCGGCAAAACCTCGCTGTTCATACCTGAATGCTTCGAGAAGGGGGGAATGA ATCTGAAATCGTTATGCTGGAAAATCGAAAAAAACGAGTTACATTGCTCTGAGGTATCCGCTTGTCTCCAGCTCGTATCGGATCTGGCAGAGTTTGTTCT AGGAGTAGTAAAGAATCCCTCTTCTTTCAAATGGAAACGGGGAAATGAAGAAGAACAAGTCCGGTTTGCTTTCCCGGAACACAGTCCGCTGTTATTGATG GACCGAATGTGGCGAATGGCTCCCCAGATCAGCGAAAACACACAGAGAGAAGCACTGAGCTTCGCGGAGGACTGGAAATCGAAACTAGTCGCTGCTAATC AGATAAAAGACGAGAACATGGAACTCGTTAGTTTCGTATTGTTCTTAGCTGCGTATAAACTGGACTCAGCTTTCGACCTCCACGACTTGTTCAACCTTTT CCAGACCAGTCATTGGTGCTTGAACCTTACTAAGCTGTTTCGAGCTGTTCGTTTCGAAGATTTGGTTTCGAAGTTTATCGCGTACCTGCTGAGAAACAAG CGGCCGAGGCAAGCTCTTCAGTGTATTCATTCATCGAGCTTGCTCGAGAACTCCCCTTCAATTGGAGACCTCAGTAAAGAGCTACAGATATGGAAAGCAT TACTCACATCTGTTTCGGATCATTACTTGGTCGATAGTTTCAAGGCACGCATTTCGTTCCTAGAGAAGCGGAAGGCGAACAGAATTCGAGCAGAGACTGC GTCCCCGAAAGCTGCAGCGGTTTCTTGCGCCACAAGCAATGCTTCTTCTTCCTCAACCGCTTCTCAACCTGCCAACAAGAGGCGTAAGGTAGCTTCATCA TCGTCGTTGATGGATGGAAATCGAAGGAAACCAGTCCGGAAGTTCCATCCCCCGCAACATCCTTTGCAGTTCACGGGAAGTTCACCAGTGGTTGTTCCTT TGGCAATTGCGCCTAATGGAATCCTATTCCGACATCTTCCTCCTCCTCCTCCCGGCCCCTACCCTGGACATGTAAGAAGCTCAGAACCGTTCTGA
AA sequence Show only first row Show all	>Lus10009979 pacid=23176690 polypeptide=Lus10009979 locus=Lus10009979.g ID=Lus10009979.BGIv1.0 annot-version=v1.0 MKGEANVGISLTLGGTAEYPPPTPTPATEMQSRLRETIDQVRHHASWIDSVAASLESTVSAAVEAAVEARSNELRLAEENNANERLKEKTLELEAKENTF NLRMKNEIELLQLEKEVIVKKLQELEEKEEEFESLGSYVEERAIQVREIEEQMEDRRKEVEAKEKEIEECFRLFQLREKGFEEQLAEFKLKQSEFQVRLT ELDARENQFKEIESKLVKRIEEAELREKLLEEERLAEFKLKQSEFQVRLSELNARESRFKELESKLVKRIEEVEVREKLLEEKQKEVKSEAEKLEELKKD VELKEKQQADHSSEANFSICVTMSGKDLQIFVNERSKDGSDSMKDEVEAALKLSPEPAKLVLDAMEGFYPPHLKIGEVEFEEVVIRKSCLMLLEHLTRMS PEIKQTVRKEAMKLACDWMTRMKCDAEHSLEVLALLQLMAAYGLASTFDEDELMARVRVIAHYSQAARLLQDLGLANKISGVIQKLIENKLQDEAYRLVS AFELHNEFPSLSPCSKENLESDAVLVSSDTGPITPDRLMIPQCSGAKRSWTDACADGNQNDYTDLDHATSANLPSQQPEMPNLPHEDPESLTSDHQAGCT NPLLEFHLSEVDEIEKGGKTSLFIPECFEKGGMNLKSLCWKIEKNELHCSEVSACLQLVSDLAEFVLGVVKNPSSFKWKRGNEEEQVRFAFPEHSPLLLM DRMWRMAPQISENTQREALSFAEDWKSKLVAANQIKDENMELVSFVLFLAAYKLDSAFDLHDLFNLFQTSHWCLNLTKLFRAVRFEDLVSKFIAYLLRNK RPRQALQCIHSSSLLENSPSIGDLSKELQIWKALLTSVSDHYLVDSFKARISFLEKRKANRIRAETASPKAAAVSCATSNASSSSTASQPANKRRKVASS SSLMDGNRRKPVRKFHPPQHPLQFTGSSPVVVPLAIAPNGILFRHLPPPPPGPYPGHVRSSEPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48385			FRIGIDA-like protein (.1)		Lus10009979 [exp]	0	1
AT1G15170			MATE efflux family protein (.1...		Lus10004899 [exp]	12.4	0.6302
AT3G19700		IKU2	HAIKU2, Leucine-rich repeat pr...		Lus10012461 [exp]	25.7	0.6721
					Lus10002303 [exp]	26.5	0.6268
AT5G27510			Protein kinase superfamily pro...		Lus10034285 [exp]	28.8	0.6293
AT5G50170			C2 calcium/lipid-binding and G...		Lus10037679 [exp]	38.0	0.6157
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10019772 [exp]	39.3	0.6106
AT1G29240			Protein of unknown function (D...		Lus10029223 [exp]	40.1	0.6506
AT1G70790			Calcium-dependent lipid-bindin...		Lus10034591 [exp]	57.5	0.6178
AT5G01310	bHLH	APTX, bHLH140	APRATAXIN-like (.1)		Lus10002216 [exp]	59.0	0.5911
AT1G60990			Glycine cleavage T-protein fam...		Lus10020818 [exp]	68.7	0.6173

Compare expression of checked genes

Lus10009979 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.