Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47020 593 / 0 Peptide chain release factor 1 (.1.2) AT3G62910 246 / 2e-77 APG3 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) AT1G56350 168 / 5e-47 Peptide chain release factor 2 (.1) AT5G36170 132 / 6e-34 ATPRFB, HCF109 high chlorophyll fluorescent 109 (.1.2.3) AT1G33330 59 / 1e-09 Class I peptide chain release factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038039 [exp] 820 / 0 AT2G47020 600 / 0.0 Peptide chain release factor 1 (.1.2) Lus10005944 [exp] 246 / 3e-77 AT3G62910 644 / 0.0 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) Lus10029444 [exp] 231 / 4e-71 AT3G62910 632 / 0.0 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) Lus10010922 [exp] 165 / 1e-45 AT1G56350 646 / 0.0 Peptide chain release factor 2 (.1) Lus10031411 [exp] 163 / 3e-45 AT1G56350 660 / 0.0 Peptide chain release factor 2 (.1) Lus10036446 [exp] 132 / 6e-34 AT5G36170 651 / 0.0 high chlorophyll fluorescent 109 (.1.2.3) Lus10041119 [exp] 124 / 1e-31 AT5G36170 627 / 0.0 high chlorophyll fluorescent 109 (.1.2.3) Lus10008558 [exp] 61 / 3e-10 AT1G33330 267 / 2e-89 Class I peptide chain release factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G114000 [exp] 628 / 0 AT2G47020 579 / 0.0 Peptide chain release factor 1 (.1.2) Potri.002G188200 [exp] 394 / 2e-135 AT2G47020 380 / 3e-130 Peptide chain release factor 1 (.1.2) Potri.014G133400 [exp] 238 / 3e-74 AT3G62910 549 / 0.0 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) Potri.013G009200 [exp] 166 / 4e-46 AT1G56350 676 / 0.0 Peptide chain release factor 2 (.1) Potri.008G075800 [exp] 142 / 2e-37 AT5G36170 671 / 0.0 high chlorophyll fluorescent 109 (.1.2.3) Potri.006G045200 [exp] 67 / 6e-12 AT3G57190 426 / 7e-148 peptide chain release factor 3, peptide chain release factor, putative (.1) Potri.019G063800 [exp] 62 / 9e-11 AT1G33330 211 / 3e-68 Class I peptide chain release factor (.1) Potri.010G181600 [exp] 45 / 2e-06 AT5G36170 88 / 2e-22 high chlorophyll fluorescent 109 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03462 [flax] [poplar] PCRF PCRF domain CL0337 [flax] [poplar] RF PF00472 [flax] [poplar] RF-1 RF-1 domain
Representative CDS sequence Show only first row Show all	>Lus10009980 pacid=23176708 polypeptide=Lus10009980 locus=Lus10009980.g ID=Lus10009980.BGIv1.0 annot-version=v1.0 ATGAGATGGAGCTTGAACGCGGCTGCAATGGTGATGAAGCAGCTTCGTCAGCTTCGATTACATTCCTCCCTAGCAATCCCTTGCTCCAATTCCACCATTA AAAGTTCATTTCTCCAGTCCCTTTCCGCGTCAATTCCTCGCCTTTACTCTACTGGTGGGTCAGAGTTTCAAGTCCAGCTGTCTCCGGATCTCATAAGGAT AATGGAGCACAGGCTATTAGCTATTGAACACAGGAGTGCTTCTCTTGAGAGCTTCATCAACCGGCCAGATTCCTCACCATCAGAGTTTTCAAGGGCGAAT AAGGAGCTCAGTAAGCTTAAAGCTTTAATGGATCTCATCAATGAGCTCAGGACTAAACAGAAGGAGATTGATGGTCTTAAATCGATGCTGTCTGAATGCG TGGACGATAAGGAGATGATCGATATGGCGAACGAGGAATTGGATCATGCACTGAATGAAGAGAAAAGGATTCAGAGTTTGCTGCTGAAATCTTTGCTTCC GAAGGATGATGCCGATGAAAGAGACTGCATTTTGGAGGTGAGGGCAGGAACTGGAGGTGAAGAGGCTTCTTTATTTGCAATGGACATATTCAAAATGTAC GAGAGATACTCGCAGAAGAACGGGTGGAAATTCGAAGTGGTTGATATAGCAGAGTCTGGTCTGAAGGGTTTCAAGGAAGCCAGCGCTGCAATCTCAGGGG CTGATGTTTTCGGGAAGCTGAAATTCGAGAGCGGGATTCATAGAGTTCAGCGAGTTCCAGTTACGGAGAAAGCTGGGCGAGTTCACACAAGCGCGGTGTC TGTTGCTATCCTTCCCCAAGCTGACGAGGTTGATGTTCAGCTGAAGAATGACGATATAAGAATCGACACTTACAGATCTGGCGGTTCAGGTGGTCAGCAT GCTAATACGACGAATAGTGCTGTCAGAATAACCCATATTTCGACAGGGATCGTGGTGTCCATACAAGATGAACGGTCCCAGCATATGAACAAGGCGAAAG CAATGAAGGTGCTCTGCGCGAAGCTCTACGAGATGGAAAGGTCGAGACTTCATCTAAACCGGTCGAAACTTCGATCAGACCAAATTGGCAGCGGAGATAG ATCGGAACGAATCAGGACGTACAACTTCCCTCAAGGGCGGGTGACGGATCACCGGGTTGGCATCACTCACCACGCAATCACCGATGTGCTGCAGGGAGAG AGTCTGGATGTGTTCATTGAGGCTCTTCTTCTTCGGCAGGAAATGGATGCCATTGAATCGTTCACTTCAGCCGATTGA
AA sequence Show only first row Show all	>Lus10009980 pacid=23176708 polypeptide=Lus10009980 locus=Lus10009980.g ID=Lus10009980.BGIv1.0 annot-version=v1.0 MRWSLNAAAMVMKQLRQLRLHSSLAIPCSNSTIKSSFLQSLSASIPRLYSTGGSEFQVQLSPDLIRIMEHRLLAIEHRSASLESFINRPDSSPSEFSRAN KELSKLKALMDLINELRTKQKEIDGLKSMLSECVDDKEMIDMANEELDHALNEEKRIQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAMDIFKMY ERYSQKNGWKFEVVDIAESGLKGFKEASAAISGADVFGKLKFESGIHRVQRVPVTEKAGRVHTSAVSVAILPQADEVDVQLKNDDIRIDTYRSGGSGGQH ANTTNSAVRITHISTGIVVSIQDERSQHMNKAKAMKVLCAKLYEMERSRLHLNRSKLRSDQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAITDVLQGE SLDVFIEALLLRQEMDAIESFTSAD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47020			Peptide chain release factor 1...		Lus10009980 [exp]	0	1
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Lus10012908 [exp]	3.5	0.8954
AT5G15340			Pentatricopeptide repeat (PPR)...		Lus10014653 [exp]	6.6	0.8890
					Lus10002136 [exp]	6.8	0.8549
AT1G80150			Tetratricopeptide repeat (TPR)...		Lus10019119 [exp]	7.3	0.8891
AT1G09060			Zinc finger, RING-type;Transcr...		Lus10017092 [exp]	7.5	0.8964
AT2G39090		APC7, AtAPC7	anaphase-promoting complex 7, ...		Lus10034164 [exp]	8.5	0.8679
AT5G22130		PNT1	PEANUT 1, mannosyltransferase ...		Lus10000321 [exp]	8.9	0.8176
AT3G21480			BRCT domain-containing DNA rep...		Lus10038633 [exp]	9.5	0.8825
AT1G09060			Zinc finger, RING-type;Transcr...		Lus10037812 [exp]	13.6	0.8813
AT5G44090			Calcium-binding EF-hand family...		Lus10008247 [exp]	16.7	0.8882

Compare expression of checked genes

Lus10009980 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.