Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62190 102 / 7e-29 Chaperone DnaJ-domain superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038040 [exp] 188 / 6e-61 AT3G62190 110 / 2e-30 Chaperone DnaJ-domain superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G188300 [exp] 139 / 3e-43 AT3G62190 171 / 4e-56 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.010G035000 [exp] 40 / 0.0002 AT1G10350 429 / 1e-151 DNAJ heat shock family protein (.1) Potri.008G194000 [exp] 40 / 0.0003 AT1G10350 402 / 4e-141 DNAJ heat shock family protein (.1) Potri.009G131800 [exp] 37 / 0.0008 AT2G17880 109 / 9e-32 Chaperone DnaJ-domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10009981 pacid=23176706 polypeptide=Lus10009981 locus=Lus10009981.g ID=Lus10009981.BGIv1.0 annot-version=v1.0 ATGGTGGGAGACGAAGCCAGAGTCTTGCTAGGCTTCCCTCCCAATTCCACCCCAACCATCTCCCAGGTTAAAGCTGCTTACAAGAAGAAGGTTTGGGAAT CGCATCCTGACTTGTTCCCAGTTCATGACAAGTGCCGTGCTGAGTCCCAGTTTAAATTGGTTTCAGAGGCTTATACTCACCTCCTATCTGGGGGACTTGG AACCGTCCATGACTTTTCCGATTCAGCAGCCAGATACGCTCGTGTAGTCGTCAGAGCAGGAGTACCAAAGGGACCAACGGGGAGGAACGAACTCCGGAGG CTTTGGATTCCGTTTCTATTCCTTGTTGGAGGGACGATTGGACTAGGAGGTTTCATCGGCACCAGGGCTTACAAGAGGCAGAAAGAAGCATTTCCTTCAC ACAACCCTTTTCTTCCTTGA
AA sequence Show only first row Show all	>Lus10009981 pacid=23176706 polypeptide=Lus10009981 locus=Lus10009981.g ID=Lus10009981.BGIv1.0 annot-version=v1.0 MVGDEARVLLGFPPNSTPTISQVKAAYKKKVWESHPDLFPVHDKCRAESQFKLVSEAYTHLLSGGLGTVHDFSDSAARYARVVVRAGVPKGPTGRNELRR LWIPFLFLVGGTIGLGGFIGTRAYKRQKEAFPSHNPFLP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62190			Chaperone DnaJ-domain superfam...		Lus10009981 [exp]	0	1
AT2G04845			Acyl-CoA N-acyltransferases (N...		Lus10012349 [exp]	5.5	0.7966
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10014917 [exp]	52.8	0.7217
AT4G31810			ATP-dependent caseinolytic (Cl...		Lus10042883 [exp]	56.9	0.7610
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Lus10020104 [exp]	60.6	0.7706
AT5G45030			Trypsin family protein (.1.2)		Lus10017140 [exp]	71.7	0.7160
AT1G14820			Sec14p-like phosphatidylinosit...		Lus10003699 [exp]	77.0	0.7552
AT3G11210			SGNH hydrolase-type esterase s...		Lus10004815 [exp]	94.7	0.7338
AT4G32340			Tetratricopeptide repeat (TPR)...		Lus10002013 [exp]	105.6	0.6963
AT4G00500			alpha/beta-Hydrolases superfam...		Lus10037847 [exp]	120.2	0.7292
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10033214 [exp]	124.7	0.6974

Compare expression of checked genes

Lus10009981 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.