Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62200 429 / 1e-141 Putative endonuclease or glycosyl hydrolase (.1) AT3G62210 249 / 2e-77 EDA32 embryo sac development arrest 32, Putative endonuclease or glycosyl hydrolase (.1) AT5G61190 259 / 1e-74 C2H2ZnF putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain (.1) AT5G61180 228 / 8e-69 Putative endonuclease or glycosyl hydrolase (.1) AT3G60940 144 / 6e-39 Putative endonuclease or glycosyl hydrolase (.1) AT3G61028 138 / 7e-37 Putative endonuclease or glycosyl hydrolase (.1.2) AT5G09840 134 / 2e-32 Putative endonuclease or glycosyl hydrolase (.1) AT5G64710 131 / 2e-31 Putative endonuclease or glycosyl hydrolase (.1.2) AT2G15560 101 / 2e-22 Putative endonuclease or glycosyl hydrolase (.1) AT3G62850 87 / 1e-17 C2H2ZnF zinc finger protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038041 [exp] 380 / 1e-125 AT3G62200 179 / 3e-49 Putative endonuclease or glycosyl hydrolase (.1) Lus10033511 [exp] 145 / 1e-35 AT5G09840 561 / 0.0 Putative endonuclease or glycosyl hydrolase (.1) Lus10020866 [exp] 143 / 3e-35 AT5G09840 565 / 0.0 Putative endonuclease or glycosyl hydrolase (.1) Lus10019845 [exp] 114 / 3e-26 AT2G15560 488 / 2e-169 Putative endonuclease or glycosyl hydrolase (.1) Lus10038949 [exp] 99 / 2e-23 AT3G62200 89 / 2e-20 Putative endonuclease or glycosyl hydrolase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G003000 [exp] 413 / 3e-135 AT3G62210 250 / 9e-78 embryo sac development arrest 32, Putative endonuclease or glycosyl hydrolase (.1) Potri.013G003100 [exp] 267 / 2e-82 AT3G62200 280 / 1e-87 Putative endonuclease or glycosyl hydrolase (.1) Potri.005G003800 [exp] 268 / 2e-80 AT3G62200 465 / 2e-156 Putative endonuclease or glycosyl hydrolase (.1) Potri.013G003301 [exp] 261 / 8e-80 AT3G62200 276 / 2e-85 Putative endonuclease or glycosyl hydrolase (.1) Potri.013G003200 [exp] 258 / 8e-76 AT3G62200 258 / 8e-76 Putative endonuclease or glycosyl hydrolase (.1) Potri.001G307700 [exp] 147 / 1e-36 AT5G09840 588 / 0.0 Putative endonuclease or glycosyl hydrolase (.1) Potri.019G004000 [exp] 145 / 7e-36 AT5G09840 406 / 2e-126 Putative endonuclease or glycosyl hydrolase (.1) Potri.009G100600 [exp] 114 / 1e-26 AT2G15560 528 / 0.0 Putative endonuclease or glycosyl hydrolase (.1) Potri.004G140400 [exp] 114 / 2e-26 AT2G15560 545 / 0.0 Putative endonuclease or glycosyl hydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [flax] [poplar] PIN PF01936 [flax] [poplar] NYN NYN domain
Representative CDS sequence Show only first row Show all	>Lus10009982 pacid=23176661 polypeptide=Lus10009982 locus=Lus10009982.g ID=Lus10009982.BGIv1.0 annot-version=v1.0 ATGATTGGGAATGGCGCTGGAAGCGGGAGCAAGGCAGAGAAGCAGTACGAAGAGGCGAAGACTTCGGTCTGGTGGGATATCGAGAACTGTCGAGTCCCCA AGGGATGCGATGCCCACGCCATCGCTCAGAACATCAGTTCCGCTCTCGCCAATCTCAACTACTGTGGCGCTATCTCTATTTCTGCTTACGGCGATACCAA TCAGATCCCGCCGGCCGTCCAAAAGGCTCTCTCTAGCACTGGCATCTCCCTCAATCATGTCCCCGCCGCTATGAACTGGGGAACTTTTTTCCATAACTGT ATTTTCTTGATTCCATTAGAAACAGGTGTAAAAGATACTAGTGACAAGAGGATCTTGGTCGATATGCTGTTCTGGGCAGTGGACAACCCTGCTCCGGCAA ATTATCTGCTCATATCCGGGGATCGTGATTTCTCCAATGCACTTCATCAACTCCGGTTGCGGAGATACAACATCCTATTGGCGCAGCCCCCGGGTGCCTC TGCTCCCCTTGTTGCTGCCGGGAAATCTGTGTGGCTCTGGACAAGCCTTGTATCAGGAGGTACTCCGCTTCCTCTTGTTGAATCTTTGCAACCATCCAAC AGTAGTAATAAGACTAGTTTACGCACCGCAATGCCGAAGACCGGTAGATCATATTCTAGTGAACATGTAAATCCTAGTGGAGGCAAGGTTGTTGATTCCA AATTGAAACGGAAGCCAGTTCATAGTAAAGGAAATGCAGCTAAACCAGTTGGTAGCCTAGAAAATGTCGAGACGAAGCCGTTTGTGAAGTTTTGCCTACC CCACGAGTTCCCTGCAAGCGGTGAATATATTGTTTCTAGGAATAGCTCTACTGCAAATATTTTTCCAGGTCCATCTAATGATCCCAAAATAGATCCTTCT TGTCACATTGTTAGTAACCCGAATCACCAAAATTCAAATGACCAAATTTTCCCTTCGATGCCTAATACGCACCCTTCGCTGCTATCAAATCAAATGCTCC CTTACAGTACTGCTTATCGTCCTACGCCTCCTAGATCTTATAATCTTGGTTATGGTCCAATACCTACTGGACCCTATAATCTTGGTTATCCTCAAATGTC TATTATACCTGATGTTAGATATCCATCAAGTTCTGTTACTAATGCTCCAGTCACTAGCAATCAAAGTATGCCTCCTATACCTGATTTTGGATATCCACCA AGTTCTGTTGCCAATGTTCCTGACATTAGCAAGTTAAGTATATTCGAACCCTCAAGTGGTACTTTTAGTCATGGACCTTCGTATGGGAACAGCGTAGGCT CCTGTCCGTTTCCTAGTCAGAATCTTTCTTCCTCAATTGTACTTCCTGCAAACCCCCCGGTGCATGGCAGCCAGTCTAGAAATCAGCATCATCGTGGTCC TTCAAATCAGCATTTCTCATCCACTCCATCTATTGCCAATAGTGTCTTCAATAGTGCTATTTTGGGAACTCAAAGCCATTATCCTTCTCCTTCAGACGAC ATCAACGGCCTTATTGATGTTATCCTACGTGCTCTAGATACTCTGAAGCACGAACAAGTTTCGCCGATTCAAGCAAATATCAGATACTGCATTCGTTTTG GGGATCCAGAACATCGGGATACCGATGTCAAGAAGGCTCTCGACTGTGCCATTGAGCATAAAAGGGTTGAGAAGCTCCGATCAGGTTCCTGGCATCTGTT TGTCCGTACGAAGGAGAAGATATGGTCGTGTGTCAATCTCAAAGGTTGCAACCCTGACATATATCCAGCAGAAACTTGGGATAGGATCAAGAAGTTCATA ACTTCACCAGACGGAAGACCTGCCTTGCTGGCTTCCGAATGCAGATACGAAGCTGCTTTGATTCTGAAACGGACATGCTTGGGAAGTTTAGTATTGGGTG AAGTGTTACAGATAATAGAGATGATGATTGATGTGAAGAAATGGATAAGTGCTGACCACACGGGATGGAAACCGGTTGCTATCCTATCCTATCCCGAAAC AGGTAAAGACCGCGGCAAGGTCCTTGCCATATAA
AA sequence Show only first row Show all	>Lus10009982 pacid=23176661 polypeptide=Lus10009982 locus=Lus10009982.g ID=Lus10009982.BGIv1.0 annot-version=v1.0 MIGNGAGSGSKAEKQYEEAKTSVWWDIENCRVPKGCDAHAIAQNISSALANLNYCGAISISAYGDTNQIPPAVQKALSSTGISLNHVPAAMNWGTFFHNC IFLIPLETGVKDTSDKRILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRLRRYNILLAQPPGASAPLVAAGKSVWLWTSLVSGGTPLPLVESLQPSN SSNKTSLRTAMPKTGRSYSSEHVNPSGGKVVDSKLKRKPVHSKGNAAKPVGSLENVETKPFVKFCLPHEFPASGEYIVSRNSSTANIFPGPSNDPKIDPS CHIVSNPNHQNSNDQIFPSMPNTHPSLLSNQMLPYSTAYRPTPPRSYNLGYGPIPTGPYNLGYPQMSIIPDVRYPSSSVTNAPVTSNQSMPPIPDFGYPP SSVANVPDISKLSIFEPSSGTFSHGPSYGNSVGSCPFPSQNLSSSIVLPANPPVHGSQSRNQHHRGPSNQHFSSTPSIANSVFNSAILGTQSHYPSPSDD INGLIDVILRALDTLKHEQVSPIQANIRYCIRFGDPEHRDTDVKKALDCAIEHKRVEKLRSGSWHLFVRTKEKIWSCVNLKGCNPDIYPAETWDRIKKFI TSPDGRPALLASECRYEAALILKRTCLGSLVLGEVLQIIEMMIDVKKWISADHTGWKPVAILSYPETGKDRGKVLAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62200			Putative endonuclease or glyco...		Lus10009982 [exp]	0	1
AT1G30010			Intron maturase, type II famil...		Lus10028124 [exp]	1.7	0.9123
AT4G32420			Cyclophilin-like peptidyl-prol...		Lus10008079 [exp]	3.9	0.8864
AT5G48030		GFA2	gametophytic factor 2 (.1)		Lus10035855 [exp]	6.0	0.8863
AT1G06730			pfkB-like carbohydrate kinase ...		Lus10018778 [exp]	8.9	0.8910
AT3G44530		HIRA	homolog of histone chaperone H...		Lus10020585 [exp]	14.0	0.8862
AT1G30010			Intron maturase, type II famil...		Lus10042828 [exp]	15.0	0.8755
AT3G56860		UBA2A	UBP1-associated protein 2A (.1...		Lus10043016 [exp]	15.5	0.8821
AT5G23630		PDR2, MIA	PI DEFICIENCY RESPONSE 2, MALE...		Lus10029800 [exp]	16.8	0.8976
AT5G22760			PHD finger family protein (.1)		Lus10009383 [exp]	17.0	0.8933
AT2G25320			TRAF-like family protein (.1)		Lus10001490 [exp]	19.0	0.8830

Compare expression of checked genes

Lus10009982 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.