Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47070 850 / 0 SBP SPL1 squamosa promoter binding protein-like 1 (.1) AT3G60030 836 / 0 SBP SPL12 squamosa promoter-binding protein-like 12 (.1) AT1G20980 255 / 6e-71 SBP ATSPL14, SPL1R2, FBR6, SPL14 squamosa promoter binding protein-like 14 (.1) AT1G76580 240 / 3e-66 SBP SPL16 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT2G33810 96 / 6e-23 SBP SPL3 squamosa promoter binding protein-like 3 (.1) AT1G53160 96 / 2e-22 SBP SPL4 squamosa promoter binding protein-like 4 (.1.2) AT5G43270 100 / 4e-22 SBP SPL2 squamosa promoter binding protein-like 2 (.1.2.3) AT5G18830 102 / 5e-22 SBP ATSPL7, SPL7 squamosa promoter binding protein-like 7 (.1.2.3) AT1G02065 98 / 9e-22 SBP SPL8 squamosa promoter binding protein-like 8 (.1.2) AT3G15270 92 / 3e-21 SBP SPL5 squamosa promoter binding protein-like 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038043 [exp] 1635 / 0 AT2G47070 896 / 0.0 squamosa promoter binding protein-like 1 (.1) Lus10010071 [exp] 894 / 0 AT2G47070 631 / 0.0 squamosa promoter binding protein-like 1 (.1) Lus10004523 [exp] 673 / 0 AT3G60030 499 / 5e-163 squamosa promoter-binding protein-like 12 (.1) Lus10016275 [exp] 100 / 9e-23 AT2G42200 179 / 1e-53 squamosa promoter binding protein-like 9 (.1) Lus10012782 [exp] 104 / 1e-22 AT5G18830 669 / 0.0 squamosa promoter binding protein-like 7 (.1.2.3) Lus10033993 [exp] 103 / 3e-22 AT5G18830 661 / 0.0 squamosa promoter binding protein-like 7 (.1.2.3) Lus10005548 [exp] 96 / 3e-22 AT3G15270 133 / 1e-39 squamosa promoter binding protein-like 5 (.1) Lus10028181 [exp] 98 / 1e-21 AT1G02065 224 / 4e-71 squamosa promoter binding protein-like 8 (.1.2) Lus10012020 [exp] 99 / 2e-21 AT2G42200 177 / 5e-51 squamosa promoter binding protein-like 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G188700 [exp] 1058 / 0 AT2G47070 972 / 0.0 squamosa promoter binding protein-like 1 (.1) Potri.014G114300 [exp] 1046 / 0 AT3G60030 962 / 0.0 squamosa promoter-binding protein-like 12 (.1) Potri.008G098600 [exp] 809 / 0 AT2G47070 833 / 0.0 squamosa promoter binding protein-like 1 (.1) Potri.010G154000 [exp] 794 / 0 AT2G47070 614 / 0.0 squamosa promoter binding protein-like 1 (.1) Potri.005G258700 [exp] 273 / 4e-77 AT1G20980 966 / 0.0 squamosa promoter binding protein-like 14 (.1) Potri.002G002400 [exp] 270 / 5e-76 AT1G20980 970 / 0.0 squamosa promoter binding protein-like 14 (.1) Potri.008G197000 [exp] 115 / 5e-26 AT5G18830 657 / 0.0 squamosa promoter binding protein-like 7 (.1.2.3) Potri.010G026200 [exp] 112 / 3e-25 AT5G18830 664 / 0.0 squamosa promoter binding protein-like 7 (.1.2.3) Potri.001G398200 [exp] 102 / 1e-24 AT1G53160 162 / 6e-51 squamosa promoter binding protein-like 4 (.1.2) Potri.014G057800 [exp] 106 / 4e-24 AT1G27370 137 / 3e-36 squamosa promoter binding protein-like 10 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03110 [flax] [poplar] SBP SBP domain
Representative CDS sequence Show only first row Show all	>Lus10009984 pacid=23176677 polypeptide=Lus10009984 locus=Lus10009984.g ID=Lus10009984.BGIv1.0 annot-version=v1.0 ATGGAAGCTAGATTTGGTACGGAAGCCAGTCATTTCTACGATATGAGGGCAGTAGGGAAAAGGAGTATGGAGTGGGATTTGAATGACTGGAAGTGGGACG GAGATCTCTTCATTGCTAGACCATTGAACGCCGTGGTGCCTTCTTCTTCAGCTGCTGCTTCAGCTGGTATGAGTAAGCAGTTCTTCCCTCTCAATAATAC TAATAATAATTCCTCCAACAGCTCATCGTCTTGCTCGGATGAAGTGGGGAATCTGGAGATGATTGAGAAAGGGAAGAGAAGGAGGAATAAGGTTATTGAT GTTGAAGAAGATGAGAGCTTGATGGTGAATGGTCATCAGGAGGAGGAAGCTGCTACTCTTAGCTTGAAGCTTGGTGGTCATGGTGGCGGAGAGATGGTCA ACTGGGAAGGAAACAGCAGTGGGAAGAAGGCTAAGTTGACTGGTGGAGGAGGTAACAACAATAACAGCTCGTCTTCGAGTCGTGCAGTTTGTCAAGTGGA GGATTGTGGTGCTGATCTGAGCAAGGCTAAGGATTATCACAGAAGGCATAAAGTTTGTGAGATGCATTCCAAAGCTACTAAGGCCCTTGTTGCTAATGTT ATGCAGCGTTTCTGTCAGCAGTGCAGGAAAGAGAAGTTGTCGGATAAGATGAGAAGTTGTCGGAGAAGATTGGCTGGCCACAATAAAAGAAGAAGGAAAA CAAATCCTGAGCCTGGTAGCAATTCAAACACTGTGAATGATGACCAGACTGGTGGCTACTTGTTGATAAGTCTTTTGAGGACACTCTCCAATATGCACTC CAGTAAATCGGAGAAATCAACAGATCAAGATCTGTTGTCTCACCTCCTAAGGAGCCTAGCTGGGCAGACGATTGAACACGGAAATCCCAAGCAAGCTCAA CTTGTACATGCAAATGGTGCCAGTCTGCAGACCTCGTCTTCCATGAAATCGAGGATGCCGAATAACTTCCCATCATGTTCGGAAGTTAGAGACAGTAATC CTAGGAGCCTTAAGATGAATAACTTCGATTTGAACGATGCGTACATAGACTCAGATGACAGAACTGACGATGTGGAAAGGTCACTAGTTCCTGCTAATGG AGGGACTAGCTCTCTTGGTTGCCCTTCATGGGCACAACAAGACTCCCTCCAATCCAGTCCTCCTCAGACGAGTGGAAACTCTGATTCGGCTTCTCCGCAG TCACCATCCAGTTCCAATGGAGATGGTCAGAACCGGACAGATCGGATAGTTTTCAAGCTATTTGGGAAGAAACCAAATGATTTTCCCTTGGTCTTGCGAG CCCAGATTCTTGACTGGCTTTCTCATAGTCCGACTGATATCGAGAGCTACATTCGTCCTGGTTGTATAGTCTTAACCATTTACCTTCGTCAGGATGAGGC AGCTTGGGATGAACTTTGCTGTGATCTTAGCACCAGCTTAAGTAGGCTTCTGCACACATCATTTGACTCATTTTGGAGAACTGGATGGCTCTTTGTCATG ATGGAACATCAAATTGCATTTGCTTACAATGGCCAGGTTGTTGTGGACACTTCTTCACCTCTTAGAAATACCGACTGCGGCAAAATCTGCAGTGTGAAAC CAATTGCAGTGTCTGCTGCTGGAAAGGTTCAATTTTTAATAAAAGGCACAAACTTGTCTCGCTCAAGCACGAGGATACTTTGTGCTATAGAAGGGAAATA CATGGTTCAAGAAGACAGTGATGATCTTGCCCATACCAAAGATATCAAGGACCAAGGCCAGCTGCAATGTGTCCCTTATTCTTGCTCTATACCCACCGGG CTCGGACGAGGATTCATTGAGGTTGAAGAGGATGGTATAAGCAACAGTTACTTCCCATTCATAGTCGCAGAGGAAGACGTTTGTTCAGAGATCTGTACGT TAGAAAACGCCTTGGAATTTTTCGAAACAGATGTACACGGCAACTTAGGGGAGGGCGGTGGAAAAATAGAAGCTAAAACTCAAGCGATGGAATTCATTCA CGAAATGGGCTGGCTTTTGCACAGAATACAGTCAAAGTCTAGATTGAATGACATGGATCCTAACGTCGATAGGTTCCCTATAAGTAGGATGAAATGGCTA ATGGACTTCTCCATGGACCATGAATGGTGTGCTGTAGTGAGAAGACTGTTGAACGTAGTTGTTCGTGACGGTATTGTCGATTTAGGAGGAGAATGCAGCT CTCTGAATAACGCTCTGGCCGAAATGGGCGTCCTTCACAGAGCTGTGAGGAGGAATTCTAGGCCCTTAGTTGAGTTCCTTTTGAAATATGCTCCTGAGAA TGACGATGAGTTCCTGTTTCGGCCTGATATGGCTGGTCCTGGAGGCTTGACTCCTCTTCATATTGCTGCTGGTAAAGATGGTTCTGAAGATATTCTGGAT GCATTAACTGATGATCCCAAAATGGTCGGGGTCGAAGCATGGAAGAATGCTCGAGACAGCACGGGCTTCACGCCCGAGGACTACGCTCGACTCCGCGGAC ACTACTCTTACATCCACCTAGTACAGAGGAAGATCAACCGGAAGCTTTCAGAAGGCTCACGACACGTGGTGCTAGACATTCCGGAAAACGAGAAGCAAGA CGAGGCGCTGAGCTCAGCATTGGAGATTATGCAGTCAGTGTTGAAGAAACCATCGGCTAGCAGCAAAAGCTGCAAGCTTTGCACAGGCAACAAGGTGGCG TATGGAGTCACCTCGTCGAGGAGGTCTCTGCTGTACCGGCCGGCGATGCTGTCGATGGTTGCTGTGGCAGCGGTTTGCGTGTGTGTGGCCCTTCTGTTCA AGAGTTGCCCCGAAGTTGTGTATGTGCTGAGTCCGTTCAGGTGGGAGGAGTTGGAGTACGGGACCAGCTAA
AA sequence Show only first row Show all	>Lus10009984 pacid=23176677 polypeptide=Lus10009984 locus=Lus10009984.g ID=Lus10009984.BGIv1.0 annot-version=v1.0 MEARFGTEASHFYDMRAVGKRSMEWDLNDWKWDGDLFIARPLNAVVPSSSAAASAGMSKQFFPLNNTNNNSSNSSSSCSDEVGNLEMIEKGKRRRNKVID VEEDESLMVNGHQEEEAATLSLKLGGHGGGEMVNWEGNSSGKKAKLTGGGGNNNNSSSSSRAVCQVEDCGADLSKAKDYHRRHKVCEMHSKATKALVANV MQRFCQQCRKEKLSDKMRSCRRRLAGHNKRRRKTNPEPGSNSNTVNDDQTGGYLLISLLRTLSNMHSSKSEKSTDQDLLSHLLRSLAGQTIEHGNPKQAQ LVHANGASLQTSSSMKSRMPNNFPSCSEVRDSNPRSLKMNNFDLNDAYIDSDDRTDDVERSLVPANGGTSSLGCPSWAQQDSLQSSPPQTSGNSDSASPQ SPSSSNGDGQNRTDRIVFKLFGKKPNDFPLVLRAQILDWLSHSPTDIESYIRPGCIVLTIYLRQDEAAWDELCCDLSTSLSRLLHTSFDSFWRTGWLFVM MEHQIAFAYNGQVVVDTSSPLRNTDCGKICSVKPIAVSAAGKVQFLIKGTNLSRSSTRILCAIEGKYMVQEDSDDLAHTKDIKDQGQLQCVPYSCSIPTG LGRGFIEVEEDGISNSYFPFIVAEEDVCSEICTLENALEFFETDVHGNLGEGGGKIEAKTQAMEFIHEMGWLLHRIQSKSRLNDMDPNVDRFPISRMKWL MDFSMDHEWCAVVRRLLNVVVRDGIVDLGGECSSLNNALAEMGVLHRAVRRNSRPLVEFLLKYAPENDDEFLFRPDMAGPGGLTPLHIAAGKDGSEDILD ALTDDPKMVGVEAWKNARDSTGFTPEDYARLRGHYSYIHLVQRKINRKLSEGSRHVVLDIPENEKQDEALSSALEIMQSVLKKPSASSKSCKLCTGNKVA YGVTSSRRSLLYRPAMLSMVAVAAVCVCVALLFKSCPEVVYVLSPFRWEELEYGTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Lus10009984 [exp]	0	1
AT5G51640		TBL17, YLS7	YELLOW-LEAF-SPECIFIC GENE 7, T...		Lus10031117 [exp]	2.0	0.8573
AT5G51640		TBL17, YLS7	YELLOW-LEAF-SPECIFIC GENE 7, T...		Lus10031695 [exp]	3.9	0.8472
AT4G31080			Protein of unknown function (D...		Lus10009547 [exp]	5.0	0.8386
AT2G26870		NPC2	non-specific phospholipase C2 ...		Lus10036039 [exp]	6.3	0.8580
AT3G52240			unknown protein		Lus10043425 [exp]	7.2	0.7914
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10007949 [exp]	10.8	0.8403
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10037672 [exp]	11.0	0.8089
AT3G03770			Leucine-rich repeat protein ki...		Lus10020303 [exp]	15.9	0.8087
AT5G57610			Protein kinase superfamily pro...		Lus10001314 [exp]	19.3	0.7545
AT1G71110			unknown protein		Lus10007962 [exp]	19.7	0.8014

Compare expression of checked genes

Lus10009984 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.