Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62240 603 / 0 C2H2ZnF RING/U-box superfamily protein (.1) AT3G15580 188 / 8e-56 APG8H, ATG8I AUTOPHAGY 8I, AUTOPHAGY 8H, Ubiquitin-like superfamily protein (.1) AT3G06420 164 / 4e-47 ATG8H autophagy 8h, Ubiquitin-like superfamily protein (.1) AT2G47090 150 / 2e-37 C2H2ZnF zinc ion binding;nucleic acid binding (.1.2) AT2G05630 129 / 4e-35 ATG8D Ubiquitin-like superfamily protein (.1.2) AT1G62040 129 / 6e-35 ATG8C autophagy 8c, Ubiquitin-like superfamily protein (.1.2) AT4G21980 127 / 7e-34 ATG8A, APG8A AUTOPHAGY-RELATED 8A, AUTOPHAGY 8A, Ubiquitin-like superfamily protein (.1.2) AT4G04620 126 / 9e-34 ATG8B autophagy 8b, Ubiquitin-like superfamily protein (.1.2) AT2G45170 121 / 3e-32 ATATG8E AUTOPHAGY 8E (.1.2) AT4G16520 120 / 7e-32 ATG8F autophagy 8f, Ubiquitin-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038048 [exp] 1194 / 0 AT3G62240 714 / 0.0 RING/U-box superfamily protein (.1) Lus10010069 [exp] 815 / 0 AT3G62240 810 / 0.0 RING/U-box superfamily protein (.1) Lus10004521 [exp] 754 / 0 AT3G62240 763 / 0.0 RING/U-box superfamily protein (.1) Lus10038046 [exp] 231 / 2e-71 AT3G15580 199 / 1e-67 AUTOPHAGY 8I, AUTOPHAGY 8H, Ubiquitin-like superfamily protein (.1) Lus10027186 [exp] 128 / 2e-34 AT2G05630 222 / 1e-76 Ubiquitin-like superfamily protein (.1.2) Lus10015563 [exp] 125 / 2e-33 AT1G62040 230 / 1e-79 autophagy 8c, Ubiquitin-like superfamily protein (.1.2) Lus10000733 [exp] 119 / 3e-31 AT4G16520 217 / 1e-74 autophagy 8f, Ubiquitin-like superfamily protein (.1.2) Lus10028933 [exp] 118 / 5e-31 AT4G16520 215 / 6e-74 autophagy 8f, Ubiquitin-like superfamily protein (.1.2) Lus10008507 [exp] 118 / 5e-31 AT4G16520 216 / 3e-74 autophagy 8f, Ubiquitin-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G189700 [exp] 718 / 0 AT3G62240 818 / 0.0 RING/U-box superfamily protein (.1) Potri.014G114900 [exp] 706 / 0 AT3G62240 830 / 0.0 RING/U-box superfamily protein (.1) Potri.013G004200 [exp] 519 / 2e-171 AT3G62240 501 / 3e-166 RING/U-box superfamily protein (.1) Potri.005G004600 [exp] 407 / 2e-129 AT3G62240 497 / 2e-165 RING/U-box superfamily protein (.1) Potri.002G189450 [exp] 197 / 6e-59 AT3G15580 194 / 2e-65 AUTOPHAGY 8I, AUTOPHAGY 8H, Ubiquitin-like superfamily protein (.1) Potri.010G153400 [exp] 189 / 5e-56 AT3G15580 191 / 3e-64 AUTOPHAGY 8I, AUTOPHAGY 8H, Ubiquitin-like superfamily protein (.1) Potri.008G099400 [exp] 183 / 7e-54 AT3G15580 187 / 7e-63 AUTOPHAGY 8I, AUTOPHAGY 8H, Ubiquitin-like superfamily protein (.1) Potri.004G013700 [exp] 135 / 3e-37 AT1G62040 216 / 3e-74 autophagy 8c, Ubiquitin-like superfamily protein (.1.2) Potri.002G228800 [exp] 128 / 1e-34 AT2G05630 224 / 1e-77 Ubiquitin-like superfamily protein (.1.2) Potri.014G153800 [exp] 128 / 1e-34 AT2G05630 202 / 6e-69 Ubiquitin-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF02991 [flax] [poplar] Atg8 Autophagy protein Atg8 ubiquitin like
Representative CDS sequence Show only first row Show all	>Lus10009987 pacid=23176654 polypeptide=Lus10009987 locus=Lus10009987.g ID=Lus10009987.BGIv1.0 annot-version=v1.0 ATGGCGATCTCCTTCAAAGCTGAATTCACCTTTGAGCAAAGACTCTCGGAATCGCGCGACATGATCGCCAAGTATCCCGATCGAGTTCCGGTAATTGCTG AAAGATACTGCAAAACTGACCTTCCTCAGATGGAAAAGAAGAAATATTTAGTCCCTAGAGACATGTCAGTCGGGCAATTCATTCACATCCTAAGCACCAG GCTTCACATGACCCCGGGAAAAGCTCTCTTCGTGTTTGTCAACAACACCCTACCTCAAACATCCACTGCCTTGGACTCGATCTATGAATCCTTTAAAGAT GAAGATGGGTTCCTCTATATGTGCTACAGCAACAAAGTCCGGTTCTCCCTCAACTGCGCTGCTGCTGCTGCTCCGTTGTCCCTCCCGAATTTCCTCCCAC CTACTGACAATAATATTGATCGACCGCAGATATGGACGATAGCTGCGCTGTTTGCGCTGACAACTTGGAATGGGTGGCTTATGGCCCCTGTGGCCATCGC GACGTTTGCTCCACTTGCGTCGTCCGCCTCCGATTCATCTGTCAGGATCAACGTTGCTGCATCTGCAAGACGGAATCAGATGTCGTTTTCGTCACCAAGG TTAGGGCATTTCCCCTCTCGTCATATCTCGATGTCGGCTATGGGAGACTACACGAGGATGATCAATGACTTTTCACTCCTGCCGTCTCAACCCACGGAGG GGAAGATTGGGTCGTATTGGTACCATGAGGATACACATTCATTTTTTGATGACGTTGATCACTACAAGATGATAAAGGCAATGTGCAGACTCTCGTGTAG CGAATGTGACAAGGTGGACGAGGAAACCAATGATGTTGCAAAGCGTCGTGCCAAGTATAGGAACGTTGAGCAGCTGAAGGGTCATTTGTTTCACGTTCAT AAGTTGGTTATGTGCAGCCTATGTTTGGAAGGAAGGAAGGTATTTATTTGTGAGCAAAAACTGTTTACGAGGTCACAGATTAGTCAGCACGTCAACACAG GGGACTCTGAGGTCGATGGCAGTGAAAGTGAAAGAGGTGGCTTTATGGGTCATCCCATTTGTGAATTTTGCAAGACCCCGTTCTATGGTGATAATGAGTT ATATACACATATGTCTAGAGACCATTATACCTGTCATATATGTCAAAGGCAGCGGCCAGGACAATATGAATATTACAAAAACTATGATGATCTAGAGATG CACTTCCGTCACGACCATTTTCTCTGTGAGGATGAGTCATGTCTTGCCAAAAAGTTTGTTGTTTTTCAAAGCGAAACAGAAATGAAGAGGCATAATACCA TTGAGCATGCTGGGCGTATGTCGCGTTCAAAGCGTAATGCAGCTCTACAGGCATGCTTCTGTTCTTATCTCTACTTCATGCAATTTAACGACTATATGCA AATACCAACCAGCTTCCAGTTTCATCGTGAACAAGATCCTCGTACTCGTCGTGGACGTGGAAGTGGAAGTGGGAGGGGACTCGCATTTCGAGATGACTAT GCTGATGATCAGCTTTCTATGGCAATTCAAGCAAGTATCGAGTCTTCTGGTACAGAGGTTTCTGGTCGTGGAGATCGTAACGATATAGATCCTCTCACCC TCACTCGGCCTTTAGAATCATTAGCTTTAGCAGAATCTACCCTGACAAGATATCGTGAAGCAGTAGGAGACAGTTCGAATGCAGTTCTGCAAGAATCTGC CTTTCCTCCCCTTCCCGTGGTCCCCAAAAGTACTCAGAAGAAACGAAAGAACAAAAAAGCAACTGCCAGCCGCCCAGCACAGGAATGGCCGGCAACAAGT GGTGCATCTTCCTCCAGTAGTTGGTCACAATGGCCTGCTATAAATACTGCAACGTCAAGCTCACAGAATACTTTCCGTGCTAGTCCTTCGCCTGCTCTAC CCGTATCAGCTCCTGAATATTCATCTGCTCGTCCACCTGGCAATCTAGGGAGCACCAGTCAGACGAGGAATCCTGTATCAGCATCAAGTTTCACTGTAAA TAGAGTATCAAGACCCTCCGATTCAGATTTCCCGGCAATGCAATCACGCAGAACGCCCTCGATCGTGCCTAACGATGTTCAGAATGCAAATAAATCCTTG GTGGAAAAAGTACGAGAAGCCCTTGATCATGATGAGGCCAAGTATGCTTCTTTCAAAGAAATATCCGGCCAGTATCGTCAGGGTACAATCGACTCTGAAA TGTACTTGGCTCGTGTTCGGATTTTTGGATTATCTCATCTTGTTCTTGATTTAGCTAGACTTTGTCCTGATCCGGCAAAGCAGAAGGAGTTGGTTGACAC ATACAACGCCAGTTTGGGAAGCAAGGGCCAGAATGGAAAGGGTTTGGGTAAAGCTGTGAAAAAGGGCAAGGGAATAGCTTATGAAGGCAGCAGCTCAAGG AATAGATTAGCGGACAACGTTATCAACACTGTCCGGACACTACAGCCACGGTACAATCCAGCAGAGCAAGACGAGGTTGAGGTGTTGTCTAAGGATGGTT ATCGGAAGCATTCCAAAGGCAAGTCAAGTCTAATGGCTGATCAACAACAAAGTTCAGAATTGCCCAGGCGACATGACTTGATTAGCCAGATCGCAAGGGA TGCTGCGTTTGCTGGCGGTGGGAGCAATCAGAAGAAGAAAATCTCCAAGTTCCAGCGAGGGAGACTGGGCGATGGATTGATGGCTGGGATGTCGGATACC AGAAATTCGGAACCTGCTCCGGATCCGGGTTTAGTGATTGGAGAAGGTAGTAGCACTAATGGAGTGTTGCCTGTTCGTGGGGTTTGGCGGAAAGGCGGAG GTAAGAAGCTTTTCGCATAG
AA sequence Show only first row Show all	>Lus10009987 pacid=23176654 polypeptide=Lus10009987 locus=Lus10009987.g ID=Lus10009987.BGIv1.0 annot-version=v1.0 MAISFKAEFTFEQRLSESRDMIAKYPDRVPVIAERYCKTDLPQMEKKKYLVPRDMSVGQFIHILSTRLHMTPGKALFVFVNNTLPQTSTALDSIYESFKD EDGFLYMCYSNKVRFSLNCAAAAAPLSLPNFLPPTDNNIDRPQIWTIAALFALTTWNGWLMAPVAIATFAPLASSASDSSVRINVAASARRNQMSFSSPR LGHFPSRHISMSAMGDYTRMINDFSLLPSQPTEGKIGSYWYHEDTHSFFDDVDHYKMIKAMCRLSCSECDKVDEETNDVAKRRAKYRNVEQLKGHLFHVH KLVMCSLCLEGRKVFICEQKLFTRSQISQHVNTGDSEVDGSESERGGFMGHPICEFCKTPFYGDNELYTHMSRDHYTCHICQRQRPGQYEYYKNYDDLEM HFRHDHFLCEDESCLAKKFVVFQSETEMKRHNTIEHAGRMSRSKRNAALQACFCSYLYFMQFNDYMQIPTSFQFHREQDPRTRRGRGSGSGRGLAFRDDY ADDQLSMAIQASIESSGTEVSGRGDRNDIDPLTLTRPLESLALAESTLTRYREAVGDSSNAVLQESAFPPLPVVPKSTQKKRKNKKATASRPAQEWPATS GASSSSSWSQWPAINTATSSSQNTFRASPSPALPVSAPEYSSARPPGNLGSTSQTRNPVSASSFTVNRVSRPSDSDFPAMQSRRTPSIVPNDVQNANKSL VEKVREALDHDEAKYASFKEISGQYRQGTIDSEMYLARVRIFGLSHLVLDLARLCPDPAKQKELVDTYNASLGSKGQNGKGLGKAVKKGKGIAYEGSSSR NRLADNVINTVRTLQPRYNPAEQDEVEVLSKDGYRKHSKGKSSLMADQQQSSELPRRHDLISQIARDAAFAGGGSNQKKKISKFQRGRLGDGLMAGMSDT RNSEPAPDPGLVIGEGSSTNGVLPVRGVWRKGGGKKLFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Lus10009987 [exp]	0	1
AT4G26750		EXT-like	extensin-like, hydroxyproline-...		Lus10033994 [exp]	6.7	0.8404
AT1G04830			Ypt/Rab-GAP domain of gyp1p su...		Lus10037829 [exp]	20.0	0.8378
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Lus10024043 [exp]	24.9	0.8236
AT4G36480		FBR11, EMB2779,...	FUMONISIN B1 RESISTANT 11, EMB...		Lus10005205 [exp]	26.9	0.8009
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10033818 [exp]	33.9	0.7975
AT3G60800			DHHC-type zinc finger family p...		Lus10024561 [exp]	43.8	0.7916
AT2G44280			Major facilitator superfamily ...		Lus10019162 [exp]	52.8	0.7333
AT1G25280	TUB	AtTLP10	tubby like protein 10 (.1.2.3)		Lus10034106 [exp]	63.2	0.7718
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10003460 [exp]	68.7	0.7669
AT2G18280	TUB	AtTLP2	tubby like protein 2 (.1.2)		Lus10014299 [exp]	74.2	0.7482

Compare expression of checked genes

Lus10009987 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.