Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62150 1805 / 0 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT2G47000 1785 / 0 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT1G02520 1772 / 0 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) AT1G02530 1731 / 0 ABCB12, PGP12 ATP-binding cassette B12, P-glycoprotein 12 (.1) AT4G01820 1653 / 0 ABCB3, MDR3, PGP3 ATP-binding cassette B3, P-glycoprotein 3 (.1) AT4G18050 1582 / 0 ABCB9, PGP9 ATP-binding cassette B9, P-glycoprotein 9 (.1) AT4G25960 1052 / 0 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1) AT3G28860 1030 / 0 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT1G10680 1028 / 0 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT2G36910 1023 / 0 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038049 [exp] 2298 / 0 AT3G62150 1891 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10010068 [exp] 1949 / 0 AT3G62150 1820 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10010067 [exp] 1750 / 0 AT1G02520 1748 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10009989 [exp] 1714 / 0 AT2G47000 1754 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10038050 [exp] 1644 / 0 AT2G47000 1697 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10010012 [exp] 1524 / 0 AT1G02520 1526 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10004520 [exp] 1243 / 0 AT2G47000 1145 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10017271 [exp] 943 / 0 AT1G27940 1689 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Lus10041565 [exp] 927 / 0 AT3G28345 1804 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G113500 [exp] 1952 / 0 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.002G187500 [exp] 1898 / 0 AT3G62150 1860 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113200 [exp] 1896 / 0 AT3G62150 1871 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113100 [exp] 1835 / 0 AT1G02520 1773 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Potri.014G113000 [exp] 1766 / 0 AT3G62150 1767 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.002G187400 [exp] 1762 / 0 AT3G62150 1702 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.010G003000 [exp] 1685 / 0 AT2G47000 1585 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Potri.001G354900 [exp] 1592 / 0 AT4G18050 1723 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Potri.002G019600 [exp] 961 / 0 AT1G27940 1654 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Potri.017G085000 [exp] 956 / 0 AT3G28345 1774 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10009988 pacid=23176660 polypeptide=Lus10009988 locus=Lus10009988.g ID=Lus10009988.BGIv1.0 annot-version=v1.0 ATGGAGGAGGATGGCAGTAACAGTAATATCAACAACAATGCCAATGAGCCCTCCACATCAGCAATCCACGAGAAGGAAGAAGAAAAGGACAAAGGGAAGA AGGAGAGTGGGAAAACAATTCCATTCCACAAGCTATTCTCCTTTGCTGACTCCACTGATGTTTTGCTGATGATTTTGGGAACAATTGGTGCTGTTGGCAA TGGTGTTGCTATGCCCTTAATGACCATTCTCTTTGGCCAACTCACTGATTCCTTTGGACAGAACCAGAACAATTCTGATGTTGTTAAAGTAGTTTCCGAG GTGGCTCTCAAGTTTGTCTATCTGGCAATTGGAACTGGTGTGCTAGCTTTTCTACAGGTTTCCTGTTGGATGGTGACTGGCGAGAGACAAGCAGCTAGGA TAAGAGGTTTGTATTTGAAAACCATATTGAGACAAGACATCGCATTTTTCGACAAGGAGACCAACACCGGAGAGGTCATCGGTAGAATGTCCGGTGACAC TGTTCTTATTCAAGATGCCATGGGCGAAAAGGTTGGGAAGTTTCTTCAGCTGTTTTCAACATTCATAGGAGGGTTTGTGATAGCATTCATCAAAGGATGG CTTCTTACCCTTGTCATGCTCAGCTCGATTCCTTTGCTTGTGATCACCGGTGCTGTCATTTCCACGTTGGTAGCTAAGATGTCGTCCACTGGACAAACAG CATACGCAAAAGCAGCAAGCGTCGTGGAGCAGACGATTGGATCCATTCGAATAGTTGCATCGTTTACCGGGGAAAAGCAGTCCATAGAGAACTACAAGAA GCATCTAGTTACTGCTTACAAATCGGGTGTTCACGAAGGTTTAGCTACCGGATTAGGGCTCGGAGTCCTTATGTTCATCATGTTTTGTAGCTATGCTCTA GCCATATGGTTTGGTGGGAAGATGATCTTGGAGAAAGGATACAGTGGTGGTGAAGTCCTCAATGTCATCATCGCTGTCTTAACCGGTTCGATGTCACTTG GGCAGGCTTCGCCTTCCCTTAGTGCATTTGCAGCCGGTCAAGCAGCAGCATACAAAATGTTCGAGACCATCAACAGGAAACCCGAGATTGATGCTTACGA CCCCAAAGGGAAGGTACTGGAAGACGTTCGAGGGGATATCGAGTTGAAAGATGTCTACTTTAGCTATCCGGCAAGGCCAGATGAGCAGATATTCAACGGA TTCTCTCTTAGAATTGAGAATGGAACAACTGTGGCCTTGGTTGGTCAAAGCGGGAGTGGGAAGTCAACTGTGATCAGCTTGATCGAGAGGTTCTACGATC CGCGAGCTGGCGAAGTCCTCATCGACGGTATTAACCTCAAGGAGCTTCAGCTCAAATGGATCAGAGGCAAAATAGGACTTGTTAGCCAAGAACCTGCATT GTTCACATCAAGCATTAAGGACAACATTGCGTATGGGAAAGATGGTGCAACTCTTGAAGAGATAAGACATGCTTCTGAGCTTGCTAATGCTGCTAAGTTC ATTGATAAACTGCCTCAGGGATTGGATACCATGGTTGGTGAGCATGGAACACAACTTTCAGGAGGACAGAAGCAGAGGATTGCAATAGCTAGAGCAATTC TGAAGAACCCTAGAATTCTGCTTCTAGATGAAGCAACAAGTGCACTTGATGCTGAATCCGAAAAGGTTGTTCAGGAGGCATTGGATAGGATCATGGGGAA CAGAACAACCGTCGTGGTTGCTCATCGGTTGAGCACCGTCAAGAACGCGGACATGATCGCTGTCATCCACCGCGGAAAGATGGTCGAGAAAGGATCTCAC AATGAACTTCTGAAAGATCCTGAAGGAGCATACTCTCAGCTCATTCGCTTGCAAGAGATCCACAAAGTTTCAGGACATGATACTGAAGACCATCATCGTC AAGATTCCTTCAGGCAATCCAGCCAACGGATTTCGCTCCCTCGATCTCTGAGTCGAGGATCCTCAGGTGGCGGCGTTGGGAGCAGCAGCCGCCGGTCTTT CTCTGTCTCGTTCGGAATTCCAACCGGAATGAATGTCACAGGCAACACGGTGGAGGATGCAGAAGCAGCAGATATTCCACCGGCAAAGGACGCACCGAAA GTGTCGATCAAGCGCTTAGCGTACATGAACAAGCCGGAGATACCGGTCCTGTTTTTCGGAAGCATTGCTGCCATAGCAAACGGTGTCATCTTCCCGATTT TCGGCATCCTAATCTCGCGAGCCATCAAGTCGTTCTACGAGCCGCCTTCCGAGTTGCGGAAGGACACAAAGTTTTGGGCTTTGATGTTCATGATTCTCGG CATCGTGTCGCTGATCGTGTATCCGTCGCAGACATACTTGTTTGGCGTGGCCGGGTGTAGGTTGATCCAGAGGATCCGGTCGATCTGCTTCGAGAAAGTG GTCCGAATGGAAGTGAGCTGGTTCGACGAGCCTGAGAACTCGAGTGGCGCGGTCGGTGCTAGGCTGTCGGCTGATGCGGCCACAGTCCGGGCCTTAGTTG GCGACAAGCTTGGACAGACTGTTCAGAACATTGCCTCTATAGTTGCTGGTTTGGTCATTGCATTCACTGCAAGTTGGCAACTTGCCTTGATTATTCTTGC CTTGGTGCCATTGATTGGGCTCAATGGCTACCTCCAACTCAAGTTCATGAAAGGATTCAGTGGAGATGCAAAGATGATGTATGAAGAGGCAAGCCAGGTG GCAAATGATGCAGTTGGGAGCATAAGAACAGTTGCATCTTTCTGTTCAGAAGAGAAAGTGATGGAGCTGTACAGAAAGAAGTGTGATGGACCAAGGAAGA CTGGAATTAGGGAAGGACTAATCAGTGGGATTGGATTTGGGGTCTCATTCTTTCTGCTGTTTTCCTTCTATGCAACCAGCTTCTATGCAGGTGCTCAGCT TGTCAAGCGTGGCAAAGCAACCTTCTCCGATGTTTTCCAGGTTTTCTTTGCACTCACAATGGCAGCACTTGCAGTCTCTCAATCAAGCTCATTTGGTCCT GATTCATCCAAGGCCAAATCAGCAGTGGCTTCTATTTTCTCAATCATAGACAGGAAATCGAAGATCGATCCCAGCGACGAAACGGGAACTACATTAGCCG CTGTTAAAGGAGACATTGAGCTAAGACACGTCAGCTTTTGCTACCCATCTAGGCCAGATGTTCAGATCTTCAGAGATCTAAGCTTAGCCATTCATTCCGG CAAGACTGTTGCTCTTGTGGGAGAGAGTGGAAGTGGGAAGTCCACAGTTATTGCTTTGCTCCAGAGGTTTTACGATCCCGATTCAGGTAGGATTACTCTT GATGGGGTTGAAATCCAGACCCTCAAGATCAAATGGCTGAGGCAACAAATGGGGCTGGTGAGCCAAGAACCCGCCTTGTTCAACGAGACGATTCGAGCCA ACATTGCTTATGGGAAGGAAGGACATGCATCAGAGTCCGAAATCCTTACGGCATCAGGACTTGCAAATGCACACAAGTTCATCAGTGGCCTCCAACAGGG ATATGATACGATGGTCGGGGAGAGAGGAATCCAACTATCCGGCGGCCAGAAACAGAGGGTGGCCATAGCTCGCGCCATCATTAAGGAACCGAAAATCTTG CTACTGGATGAGGCGACAAGTGCGTTGGATGCAGAGTCCGAGAAAGTGGTACAAGATGCTCTAGACAAAGTTATGGTGAACAGAACGACCGTTGTGGTGG CTCATCGGCTGTCGACGATAAAAAACGCGGATGTGATCGCGGTGGTAAAGAACGGAGTAATCGTTGAGAAAGGAAGGCATGAAAGTTTGATCAATATCAA AGATGGGTTCTATGCCTCCCTTGTTCAGCTTCACACTAGTGCCTCTACTTCCTAG
AA sequence Show only first row Show all	>Lus10009988 pacid=23176660 polypeptide=Lus10009988 locus=Lus10009988.g ID=Lus10009988.BGIv1.0 annot-version=v1.0 MEEDGSNSNINNNANEPSTSAIHEKEEEKDKGKKESGKTIPFHKLFSFADSTDVLLMILGTIGAVGNGVAMPLMTILFGQLTDSFGQNQNNSDVVKVVSE VALKFVYLAIGTGVLAFLQVSCWMVTGERQAARIRGLYLKTILRQDIAFFDKETNTGEVIGRMSGDTVLIQDAMGEKVGKFLQLFSTFIGGFVIAFIKGW LLTLVMLSSIPLLVITGAVISTLVAKMSSTGQTAYAKAASVVEQTIGSIRIVASFTGEKQSIENYKKHLVTAYKSGVHEGLATGLGLGVLMFIMFCSYAL AIWFGGKMILEKGYSGGEVLNVIIAVLTGSMSLGQASPSLSAFAAGQAAAYKMFETINRKPEIDAYDPKGKVLEDVRGDIELKDVYFSYPARPDEQIFNG FSLRIENGTTVALVGQSGSGKSTVISLIERFYDPRAGEVLIDGINLKELQLKWIRGKIGLVSQEPALFTSSIKDNIAYGKDGATLEEIRHASELANAAKF IDKLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESEKVVQEALDRIMGNRTTVVVAHRLSTVKNADMIAVIHRGKMVEKGSH NELLKDPEGAYSQLIRLQEIHKVSGHDTEDHHRQDSFRQSSQRISLPRSLSRGSSGGGVGSSSRRSFSVSFGIPTGMNVTGNTVEDAEAADIPPAKDAPK VSIKRLAYMNKPEIPVLFFGSIAAIANGVIFPIFGILISRAIKSFYEPPSELRKDTKFWALMFMILGIVSLIVYPSQTYLFGVAGCRLIQRIRSICFEKV VRMEVSWFDEPENSSGAVGARLSADAATVRALVGDKLGQTVQNIASIVAGLVIAFTASWQLALIILALVPLIGLNGYLQLKFMKGFSGDAKMMYEEASQV ANDAVGSIRTVASFCSEEKVMELYRKKCDGPRKTGIREGLISGIGFGVSFFLLFSFYATSFYAGAQLVKRGKATFSDVFQVFFALTMAALAVSQSSSFGP DSSKAKSAVASIFSIIDRKSKIDPSDETGTTLAAVKGDIELRHVSFCYPSRPDVQIFRDLSLAIHSGKTVALVGESGSGKSTVIALLQRFYDPDSGRITL DGVEIQTLKIKWLRQQMGLVSQEPALFNETIRANIAYGKEGHASESEILTASGLANAHKFISGLQQGYDTMVGERGIQLSGGQKQRVAIARAIIKEPKIL LLDEATSALDAESEKVVQDALDKVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGRHESLINIKDGFYASLVQLHTSASTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Lus10009988 [exp]	0	1
AT1G47530			MATE efflux family protein (.1...		Lus10042344 [exp]	1.4	0.9844
AT5G40690			unknown protein		Lus10010488 [exp]	2.0	0.9831
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Lus10014284 [exp]	3.0	0.9794
AT4G19880			Glutathione S-transferase fami...		Lus10014304 [exp]	4.5	0.9841
					Lus10015339 [exp]	4.5	0.9829
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Lus10007972 [exp]	5.2	0.9836
AT5G02790		GSTL3	Glutathione transferase L3, Gl...		Lus10015049 [exp]	6.0	0.9829
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10021258 [exp]	11.0	0.9793
AT1G63970		MECPS, ISPF	2C-METHYL-D-ERYTHRITOL 2,4-CYC...		Lus10028759 [exp]	17.7	0.9795
AT1G16120		WAKL1	wall associated kinase-like 1 ...		Lus10008105 [exp]	18.0	0.9787

Compare expression of checked genes

Lus10009988 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.