Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62150 1625 / 0 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT2G47000 1618 / 0 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT1G02520 1610 / 0 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) AT1G02530 1550 / 0 ABCB12, PGP12 ATP-binding cassette B12, P-glycoprotein 12 (.1) AT4G01820 1519 / 0 ABCB3, MDR3, PGP3 ATP-binding cassette B3, P-glycoprotein 3 (.1) AT4G18050 1462 / 0 ABCB9, PGP9 ATP-binding cassette B9, P-glycoprotein 9 (.1) AT5G46540 1419 / 0 ABCB7, PGP7 ATP-binding cassette B7, P-glycoprotein 7 (.1) AT3G28860 1035 / 0 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT1G10680 1011 / 0 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT4G25960 1006 / 0 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038050 [exp] 2132 / 0 AT2G47000 1697 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10010067 [exp] 1895 / 0 AT1G02520 1748 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10010012 [exp] 1787 / 0 AT1G02520 1526 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10038049 [exp] 1692 / 0 AT3G62150 1891 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10009988 [exp] 1687 / 0 AT3G62150 1896 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10010068 [exp] 1621 / 0 AT3G62150 1820 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10010074 [exp] 1571 / 0 AT1G02520 1591 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10030674 [exp] 1024 / 0 AT3G28860 2271 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10005249 [exp] 1023 / 0 AT3G28860 2267 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G113000 [exp] 1723 / 0 AT3G62150 1767 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113500 [exp] 1721 / 0 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.002G187500 [exp] 1714 / 0 AT3G62150 1860 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.002G187400 [exp] 1706 / 0 AT3G62150 1702 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113200 [exp] 1692 / 0 AT3G62150 1871 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113100 [exp] 1650 / 0 AT1G02520 1773 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Potri.010G003000 [exp] 1568 / 0 AT2G47000 1585 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Potri.001G354900 [exp] 1511 / 0 AT4G18050 1723 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Potri.017G081100 [exp] 1042 / 0 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Potri.003G094400 [exp] 1010 / 0 AT4G25960 2000 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10009989 pacid=23176674 polypeptide=Lus10009989 locus=Lus10009989.g ID=Lus10009989.BGIv1.0 annot-version=v1.0 ATGGAGGAAGATCAGATGGCTTCTTCTGCTACAACTGAGATAAAGAACAGCAAAAATGGCGGGAAGGCTAAAACGGTGCCGTTCAGAAAGCTGTTCTCGT TTGCAGACACAACTGACGTGGCCTTGATGATTCTGGGGACAGTTGGGTCTATTGGGAATGGTTTGGCTATGCCTTTGATGACGATCATACTGGGTCAAAC TATTAACTCCTTTGGGATGAACCAGACCGATGTCGTCAATGCCATTTCCAAGGTTTCTGTAAAATATGTCTACTTGGCCATGGGAGCTGCTGTGGCATCA TTTCTTGAGGTGACTTGTTGGATGGTAACCGGAGAAAGGCAAGCGGCGAGAATAAGGAGTCTGTACTTGGAGACAATTTTGAGACAGGATGTTGCATTCT TCGACAGTGAAACCAGCACGGGAGAGGTTATAGGGAGGATGTCTGGCGACACTGTTCTAATCCAAGATGCCATGGGCGAAAAGGTAGGGAAGTTTCTGCA ACTGATGGCAACATTTATCGGTGGGTTCGCTATAGCATTCATCAAAGGATGGAACCTTGCGTTGGTAATGTTATCAGCAATCCCACTTTTGGTGATCGCC GGAGGAGCGATGGCCACAATCATGGCCAAGATGAGTGCTAGAGGCCAGCAAGCTTATGCTGATGCCGGAACTCTTGTTGAGCAAACCATTGGCTCCATTC GAACCGTTGCATCATTTACAGGGGAGAAGCAAGCAGTACATACCTATAACAAATTTCTAGAGCTAGCATATAAGTCAGGTGTGAAAGAAGGTGCAACTAC CGGGATAGGGATTGGCATGGTTCTCGCAATTGTGTTCTGCAGTTATGCCTTAGCTGTTTGGTATGGTGGGAAGTTGATATTGGATAAAGGATATTCTGGC GGACAAGTTATAAATGTGATCGTCGCCGTCTTAACCGCTTCCATGTCACTGGGCCAAGCAGCACCGCCGATGAGTGCGTTCGCCGCCGGCAAAGCAGCGG CGTACAAAATGTTCGAAACAATCAACAGGCGTCCAACAATCGACGCTTCCGATCCCAAAGGAAAAACGCTCCAGGAAGTCAAAGGAGACATCGAGTTCAA ACAAGTCAGCTTCTCCTACCCAGCTAGACCAGACGAACTGATCTTCACCTCCTTCTCACTCTCAATCCCTAGCGGCACCACCGCCGCGCTCGTCGGCGAA AGCGGCAGCGGGAAATCGACGGTGATAAGCTTGATCGAGCGGTTCTACGATCCACAGTCCGGCGAAGTGCTGATCGACGGTATCAATCTGAAGGAATTTC AGCTGAAGTGGATCCGGCAGCAGATCGGATTGGTTAGTCAGGAGCCTGTACTGTTTGCGTCGAGCATTAGGGATAATATCGCTTATGGTAAAGATGGCGC CAGTGATGATGACATCAAAGCTGCTACTAAGCTCGCTAATGCCGCTAAGTTCATCGATAAGCTTCCTCAGGGAATTGACACCATGGTTGGTGAGCATGGA ACTCAGCTATCGGGCGGGCAGAAGCAGAGAATCGCCATAGCCAGAGCAATTTTGAAGAACCCTAGAATTCTGCTACTGGATGAAGCCACAAGCGCACTGG ACGCAGAATCAGAGAGGATAGTTCAGGATGCATTGGACAAGATCATGGTGGAACGAACCACTGTCATCGTTGCTCATCGATTGACCACCGTTAGAGATGC TGATGTAATCGCCGTCATTCATCGAGGAAAGATCGTCGAAAAAGGTTCTCATACAAAGCTGCTAGAGGATCCTGAAGGAGCATACTCGCAACTAATCCGA TTACAACAAGTAAACAGAGAAACAGAAGGCGAAGAACAAGAAGAAGAATTTCCACAGGAAATCACTTCAGAATCATTCAGATCACACTCGTCGGCTCTAA GAGCCTCACTACACAGATCTATAAGCAAAGGATCATCCAGACACAGCAGTCACAGATCATCATTCACTCTCCCGATCGGGGTTCCCACGGTGGTAGATCA TCAGAACAGCAACTCGGTCCACGAATTCGACGAATTCAAAACCACAAGAGAGAAAAACATGCCCGACGTCCCCTTAACCCGACTGGCGTATCTAAACAAG CCGGAGCTACCAGCTATCATGGCTGGCACGATCGCTGCCTGCATCAATGGCTCGATCATGCCAATCTACGGTGTCCTGATAAGCAAAGCCATCAAGACGT TCTTCGAGACACCGCACCAAGTGAAGATCCATACGAGGTTTTGGTCACTCATGTTCATGACGCTCGGGTTGGCTACTTTAATAGTGCATCCTCTGAGGTC ATACTTCTTCGCGGTGGCTGGGTCTAGGCTGATCCAGAGGATCCGGTCAATGTGTTTCGAGAAAGTGGTTCATACCGAGATTGGTTGGTTCGACGAGGCT GAGCATTCAAGTGGTGCGATAGGGGCTAGGCTTTCGGCCGATGCTGCGATCGTGAGGTCGCTAGTAGGGGATGCGTTGGCTGTGAATGTTCAGAATGTTG CTACTGCAGCTGCTGCTTTGATCATTGCTTTCACTGCTAGTTGGCAGCTTGCGTTTGTTATCTTGGCATTGCTGCCTCTCACTCTTATTAATGGGTTTGC ACAAGTCAAGTTCATGAAGGGTTTTAGTGCTGATGCTAAGGCGATGTACGAGGAAGCTAGTCAAGTTGCGAACGATGCAGTAGGGAGCATAAGAACGGTG GCTTCCTTCTGTGCGGAACAGAAAGTGATGGAACTGTACAGAAAGAAGTGTGAAGGGCCAGCGAAAAGTGGGGTAAAGCAAGGACTCATAAGTGGGATTG GGCTAGGGTTGTCTTCCTTGTTTCTCTACTCTTTCTATGCAATCAGCTTCTACATTGGAGCCAAACTAGTTGACAAGGGTGATGCAACTTTTACAGATGT TTTCCAAGTATTCTATGCTCTGACCATGGCATCAATGGGAGTTGCTCATTCAAGCGGAGCAACCGACACCTCAAAGGCAAAAGCAGCAGCTGCTTCCGTG TTCTCAATCATAGACAGGAAGTCTCAGATCGATTCAAGCGATGAATCTGGAACGATCCTGTCAAATGTAAAAGGAGAGATTGAACTTGTTCATCTCAGCT TTAAGTATCCTTCCAGGCCTGATGTTCAGATCTTCAGAGACATCAACTTGGCCATCCATTCAGGACAAACCGTTGCATTAGTGGGAGAAAGCGGGAGCGG GAAATCAACGGTGATAGCACTACTACAAAGATTCTACGATCCAGATTCAGGACACATCACATTAGACGGAATCGAAATAAAAATGCTCCAATTAAAATGG CTGAGGAAGCAAATGGGGCTTGTCGGGCAAGAGCCGTCGCTATTCAACGATACGATCCGAGCCAACATCGCGTACGGGAAAGAAGGGGATGCCACGGAGG CAGAGATCATTTCGGCATCGGAGCTAGCCAATGCTCACAGATTCATCAGCGGGCTAGGGGAAGGGTACCATACGATGGTCGGGGAACGTGGGGTCCAGTT GTCGGGAGGGCAGAAGCAGAGGGTGGCCATAGCTCGAGCCATCGTGAAAAGTCCGAAGATCTTGTTGCTAGACGAGGCAACGAGTGCTTTGGATGCCGAG TCGGAAAAAGTTGTGCAGGACGCGTTGGAGAGAGTGATGAAGAGCAGAACGACGGTGGTGGTGGCCCACCGGCTGTCGACGATTAAGAATGCGGATCTGA TCGCTGTGGTGAAGAATGGAGTGATTGTGGAGAAGGGTAGCCATGAGAGCTTGATGGGTATTAAGGATGGTTCCTATGCTTCATTGGTTGCTCTTCATTC TAGTGCCAAAACTGCTTAG
AA sequence Show only first row Show all	>Lus10009989 pacid=23176674 polypeptide=Lus10009989 locus=Lus10009989.g ID=Lus10009989.BGIv1.0 annot-version=v1.0 MEEDQMASSATTEIKNSKNGGKAKTVPFRKLFSFADTTDVALMILGTVGSIGNGLAMPLMTIILGQTINSFGMNQTDVVNAISKVSVKYVYLAMGAAVAS FLEVTCWMVTGERQAARIRSLYLETILRQDVAFFDSETSTGEVIGRMSGDTVLIQDAMGEKVGKFLQLMATFIGGFAIAFIKGWNLALVMLSAIPLLVIA GGAMATIMAKMSARGQQAYADAGTLVEQTIGSIRTVASFTGEKQAVHTYNKFLELAYKSGVKEGATTGIGIGMVLAIVFCSYALAVWYGGKLILDKGYSG GQVINVIVAVLTASMSLGQAAPPMSAFAAGKAAAYKMFETINRRPTIDASDPKGKTLQEVKGDIEFKQVSFSYPARPDELIFTSFSLSIPSGTTAALVGE SGSGKSTVISLIERFYDPQSGEVLIDGINLKEFQLKWIRQQIGLVSQEPVLFASSIRDNIAYGKDGASDDDIKAATKLANAAKFIDKLPQGIDTMVGEHG TQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERIVQDALDKIMVERTTVIVAHRLTTVRDADVIAVIHRGKIVEKGSHTKLLEDPEGAYSQLIR LQQVNRETEGEEQEEEFPQEITSESFRSHSSALRASLHRSISKGSSRHSSHRSSFTLPIGVPTVVDHQNSNSVHEFDEFKTTREKNMPDVPLTRLAYLNK PELPAIMAGTIAACINGSIMPIYGVLISKAIKTFFETPHQVKIHTRFWSLMFMTLGLATLIVHPLRSYFFAVAGSRLIQRIRSMCFEKVVHTEIGWFDEA EHSSGAIGARLSADAAIVRSLVGDALAVNVQNVATAAAALIIAFTASWQLAFVILALLPLTLINGFAQVKFMKGFSADAKAMYEEASQVANDAVGSIRTV ASFCAEQKVMELYRKKCEGPAKSGVKQGLISGIGLGLSSLFLYSFYAISFYIGAKLVDKGDATFTDVFQVFYALTMASMGVAHSSGATDTSKAKAAAASV FSIIDRKSQIDSSDESGTILSNVKGEIELVHLSFKYPSRPDVQIFRDINLAIHSGQTVALVGESGSGKSTVIALLQRFYDPDSGHITLDGIEIKMLQLKW LRKQMGLVGQEPSLFNDTIRANIAYGKEGDATEAEIISASELANAHRFISGLGEGYHTMVGERGVQLSGGQKQRVAIARAIVKSPKILLLDEATSALDAE SEKVVQDALERVMKSRTTVVVAHRLSTIKNADLIAVVKNGVIVEKGSHESLMGIKDGSYASLVALHSSAKTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47000		PGP4 ,MDR4, ABC...	MULTIDRUG RESISTANCE 4, ARABID...		Lus10009989 [exp]	0	1
AT2G46950		CYP709B2	"cytochrome P450, family 709, ...		Lus10025756 [exp]	4.7	0.9159
AT2G35980		NHL10, YLS9, AT...	YELLOW-LEAF-SPECIFIC GENE 9, A...		Lus10000324 [exp]	7.2	0.8845
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10042857 [exp]	7.5	0.9126
AT2G45360			Protein of unknown function (D...		Lus10024565 [exp]	7.5	0.8959
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10015188 [exp]	10.2	0.9160
AT4G15420			Ubiquitin fusion degradation U...		Lus10031538 [exp]	18.0	0.8784
AT3G11180			2-oxoglutarate (2OG) and Fe(II...		Lus10004387 [exp]	20.9	0.8843
AT4G35160			O-methyltransferase family pro...		Lus10015311 [exp]	23.9	0.9077
AT3G52710			unknown protein		Lus10021354 [exp]	33.3	0.8920
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10027585 [exp]	33.5	0.8939

Compare expression of checked genes

Lus10009989 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.