Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64120 214 / 2e-67 Peroxidase superfamily protein (.1) AT2G38380 214 / 4e-67 Peroxidase superfamily protein (.1) AT2G38390 214 / 6e-67 Peroxidase superfamily protein (.1) AT2G41480 213 / 9e-67 Peroxidase superfamily protein (.1) AT3G32980 212 / 5e-66 Peroxidase superfamily protein (.1) AT2G18150 211 / 9e-66 Peroxidase superfamily protein (.1) AT2G18140 210 / 1e-65 Peroxidase superfamily protein (.1) AT4G08770 210 / 2e-65 Prx37 peroxidase 37, Peroxidase superfamily protein (.1) AT3G50990 209 / 5e-65 Peroxidase superfamily protein (.1) AT1G14540 207 / 7e-65 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038055 [exp] 539 / 0 AT2G41480 243 / 2e-78 Peroxidase superfamily protein (.1) Lus10028736 [exp] 256 / 9e-84 AT1G05260 266 / 4e-88 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10032926 [exp] 244 / 6e-79 AT1G05260 292 / 5e-98 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10028688 [exp] 239 / 6e-77 AT4G11290 265 / 5e-87 Peroxidase superfamily protein (.1) Lus10038054 [exp] 226 / 1e-71 AT5G51890 264 / 7e-87 Peroxidase superfamily protein (.1) Lus10004163 [exp] 218 / 1e-68 AT5G06720 446 / 1e-158 peroxidase 2 (.1) Lus10012684 [exp] 213 / 7e-67 AT2G41480 395 / 2e-138 Peroxidase superfamily protein (.1) Lus10027163 [exp] 213 / 7e-67 AT4G11290 491 / 4e-176 Peroxidase superfamily protein (.1) Lus10007051 [exp] 212 / 2e-66 AT2G41480 403 / 1e-141 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G006800 [exp] 271 / 1e-89 AT1G05260 291 / 2e-97 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.015G003600 [exp] 266 / 9e-88 AT1G05260 285 / 6e-95 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.015G003500 [exp] 265 / 6e-87 AT1G05260 291 / 1e-97 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.016G125000 [exp] 235 / 2e-75 AT2G41480 419 / 7e-148 Peroxidase superfamily protein (.1) Potri.006G069600 [exp] 219 / 2e-69 AT2G41480 498 / 6e-179 Peroxidase superfamily protein (.1) Potri.018G131600 [exp] 218 / 6e-69 AT2G41480 478 / 4e-171 Peroxidase superfamily protein (.1) Potri.007G122451 [exp] 216 / 6e-68 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1) Potri.010G236890 [exp] 215 / 8e-68 AT1G14550 417 / 3e-147 Peroxidase superfamily protein (.1) Potri.003G214500 [exp] 215 / 1e-67 AT5G19890 422 / 4e-149 Peroxidase superfamily protein (.1) Potri.010G236850 [exp] 214 / 2e-67 AT1G14550 404 / 5e-142 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10009990 pacid=23176667 polypeptide=Lus10009990 locus=Lus10009990.g ID=Lus10009990.BGIv1.0 annot-version=v1.0 ATGATGAGCAATAGCAGCAGTACTCTGTTACTGTTTCTTCTGGCGATTGCAGTTACTCATGTGGCCGCGGCAGGTCGTGCTCTGGAAGTAGGGTTCTATG ACTCCACGTGTCCCTCGGCCGAAAGGATCGTGAGCCGAGTGGTGAGAAAGGCACTTACAGAAAACCCCGGGTTGGCTCCTGGGATCGTTCGCTTGCATTT CCACGATTTTCTTGTTCAGGGTCCCGACGCTTCGATACTGCTCGATCCGGTCGAAGGCGAGCCGGAGCCCGTGGAGAAAAAGGCCCCTGCCCACGTCCCG GGCTTGCGAGGCTTCGAGGTGATCGACGCCGCGAAATCCGCCCTAGAAGCTCGATGCCCTGGGACTGTCTCGTGCGCTGACATCCTCGCGTTCGCTGCAC GCGACAGTGCCTCCCACGCCTCATCTGCAAGAAACTTCACCTACAAGGTTCCTGCAGGGAGGCGCGATGGAAACACGTCCCTCGCATCGTTGGTCTCGCA AAATCTCCCTCCACTTTCTAGCGACGTGGATGCCATCCGGCAAAGCTTCGCTAACAAAGGCTTGACGTTGAATGAAACAGTGGCGCTATTCGGGGCCCAC TCGTTCGGAACTGCCACGTGCCAGTTCTTCTCTAACAGGCTATACTTCTTCGAGACGAATGGGACCCAGGGGCAGGACCCGTCAATGAATCCGGGCTATG CCCGGTTTCTAAAGTCCAAGTGCCCTAAACGGGGAAATGGGCTGGGCCGTGGGGTGAATCTAGATAAGGTGAGCCCAAATATCCTTGACGTTCAGTATTA CCAAAACTTGGTGAACAGGATGGGGCTGTTGGACTCTGATCAAGGGCTGATGAGCAATGCTACCACGGCGGATCTCGTGAAGGAGTACGCCAGAAATGCG GGGAAGTGGCGGAGGGATTTCGCGGCGGCGATGGTGAAAATGGGAACCATCGGTGTGTTGACTGGGAATGAAGGCCAGATCAGGAAGAACTGTCGCCTTA TTAATAAATAA
AA sequence Show only first row Show all	>Lus10009990 pacid=23176667 polypeptide=Lus10009990 locus=Lus10009990.g ID=Lus10009990.BGIv1.0 annot-version=v1.0 MMSNSSSTLLLFLLAIAVTHVAAAGRALEVGFYDSTCPSAERIVSRVVRKALTENPGLAPGIVRLHFHDFLVQGPDASILLDPVEGEPEPVEKKAPAHVP GLRGFEVIDAAKSALEARCPGTVSCADILAFAARDSASHASSARNFTYKVPAGRRDGNTSLASLVSQNLPPLSSDVDAIRQSFANKGLTLNETVALFGAH SFGTATCQFFSNRLYFFETNGTQGQDPSMNPGYARFLKSKCPKRGNGLGRGVNLDKVSPNILDVQYYQNLVNRMGLLDSDQGLMSNATTADLVKEYARNA GKWRRDFAAAMVKMGTIGVLTGNEGQIRKNCRLINK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41480			Peroxidase superfamily protein...		Lus10009990 [exp]	0	1
AT3G02310	MADS	AGL4, SEP2	SEPALLATA 2, AGAMOUS-like 4, K...		Lus10004638 [exp]	1.0	0.8662
AT1G06260			Cysteine proteinases superfami...		Lus10041788 [exp]	1.4	0.8288
					Lus10039892 [exp]	23.9	0.7124
AT2G35190		NSPN11, ATNPSN1...	novel plant snare 11 (.1)		Lus10003004 [exp]	25.1	0.7122
AT3G08890			Protein of unknown function, D...		Lus10012498 [exp]	27.7	0.7112
					Lus10032968 [exp]	30.4	0.7099
					Lus10032814 [exp]	31.7	0.7093
					Lus10026042 [exp]	33.9	0.7093
					Lus10012669 [exp]	36.0	0.7093
					Lus10013504 [exp]	37.9	0.7093

Compare expression of checked genes

Lus10009990 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.