Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10660 245 / 1e-79 unknown protein AT5G62960 222 / 2e-70 unknown protein AT2G47115 210 / 1e-66 unknown protein AT3G27770 182 / 2e-55 unknown protein AT1G70505 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038056 [exp] 575 / 0 AT1G10660 252 / 1e-82 unknown protein Lus10029133 [exp] 226 / 4e-71 AT1G10660 338 / 5e-115 unknown protein Lus10014556 [exp] 221 / 4e-70 AT5G62960 305 / 3e-102 unknown protein Lus10032130 [exp] 219 / 2e-69 AT5G62960 303 / 2e-101 unknown protein Lus10027692 [exp] 203 / 2e-63 AT5G62960 355 / 2e-122 unknown protein Lus10042109 [exp] 196 / 2e-60 AT5G62960 397 / 1e-138 unknown protein Lus10013029 [exp] 164 / 2e-45 AT1G23400 658 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10039964 [exp] 159 / 1e-44 AT5G62960 247 / 7e-78 unknown protein Lus10002386 [exp] 146 / 1e-41 AT5G62960 320 / 5e-109 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G190200 [exp] 283 / 3e-94 AT2G47115 344 / 1e-118 unknown protein Potri.014G115200 [exp] 268 / 1e-88 AT2G47115 340 / 4e-117 unknown protein Potri.001G347400 [exp] 235 / 7e-76 AT3G27770 314 / 9e-107 unknown protein Potri.010G042600 [exp] 233 / 6e-75 AT1G10660 372 / 1e-129 unknown protein Potri.015G078200 [exp] 219 / 4e-69 AT5G62960 382 / 8e-133 unknown protein Potri.012G082400 [exp] 212 / 1e-66 AT5G62960 387 / 1e-134 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009991 pacid=23176666 polypeptide=Lus10009991 locus=Lus10009991.g ID=Lus10009991.BGIv1.0 annot-version=v1.0 ATGTCGGATTCCGACAGGAGGGGAATCGAGTATTGGCTGCAATGGCAAGTTGCCGTTTGCGGGTTCATCATCTTCGCCCCCGGAGTTACGGCGGCCGTTT ATCTGATCAAGAAGAATCTCCCACAGGAACCAGAAGAGGAAGAAGAGACGATTTTTCTTAACCATCTATGGAAGCCTTGCTGGAGATTCCTCAACCCTCT ATGGCTTCTTGCTTACAGAGTGTTCGCTCTCTTCTGCTTGGCTCCCGTGCTCTATGGCGCCGTCGCCGCCGATGGATTCTCCGCCTTCTTCTTCTACACT CAGTGGACATTTACCCTTGTGATGGTGTACTTTGCGTTGGCTACTGCAATTTCTGTATATGGTTGTTACTGGGAATCAACAAAACAACCATCTGCTGTAG CTAAAAATGGTGAAGAAGCCTCTTTGTTCATTGAAAGGGCTGTGGAGGATCATGATAAAGTGTCTGAAACAGTTCAACTGCTGAAACCTGGGTTCTGGGG ATATCTATTGCTGATTATATACCAGACATCTGGAGGGGCAGTGATCTTGACTGACATTGTGTTCTGGGGTCTTCTCCTCCCTTTCCAATCCGGTGAACAT TTCAAGTTGGATTTGCTGATGGGCTGCATCCACTCCATGAATGCTGGTTTCCTAATCCTTGATACTGCTCTCAACAGCCTTCCGTTTCCTTGGTTCCGGT TCGCATACTTCGTGCTGTGGAGTTCTCTCTATATTGTTTTCCAATGGGCGATCCATGCCTGTGGGATTTCGTGGTGGCCGTACGCTTTCTTGGAGCTGAA CACTCCATGGGCTCCTTTATGGTACTTAGGTATGGCATTGGTGCATGTCCCTTTTTACGCAATGTACGTGCTGGTTGTCAAAGCCAAAGAGTCAATCCTC CACAAATGGTTACCTTCTCATTCTCCTCGGCCATATTAG
AA sequence Show only first row Show all	>Lus10009991 pacid=23176666 polypeptide=Lus10009991 locus=Lus10009991.g ID=Lus10009991.BGIv1.0 annot-version=v1.0 MSDSDRRGIEYWLQWQVAVCGFIIFAPGVTAAVYLIKKNLPQEPEEEEETIFLNHLWKPCWRFLNPLWLLAYRVFALFCLAPVLYGAVAADGFSAFFFYT QWTFTLVMVYFALATAISVYGCYWESTKQPSAVAKNGEEASLFIERAVEDHDKVSETVQLLKPGFWGYLLLIIYQTSGGAVILTDIVFWGLLLPFQSGEH FKLDLLMGCIHSMNAGFLILDTALNSLPFPWFRFAYFVLWSSLYIVFQWAIHACGISWWPYAFLELNTPWAPLWYLGMALVHVPFYAMYVLVVKAKESIL HKWLPSHSPRPY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10660			unknown protein		Lus10009991 [exp]	0	1
AT3G02460			Ypt/Rab-GAP domain of gyp1p su...		Lus10034099 [exp]	2.8	0.8074
AT1G05940		CAT9	cationic amino acid transporte...		Lus10042898 [exp]	14.8	0.8056
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039430 [exp]	24.4	0.7130
AT5G47540			Mo25 family protein (.1)		Lus10017565 [exp]	30.1	0.7872
AT5G62610	bHLH	bHLH079	basic helix-loop-helix (bHLH) ...		Lus10033120 [exp]	32.4	0.7104
AT5G42000			ORMDL family protein (.1.2)		Lus10017314 [exp]	39.3	0.7157
AT1G21650		SECA2	Preprotein translocase SecA fa...		Lus10028560 [exp]	39.9	0.7777
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10035481 [exp]	47.8	0.7811
AT5G39570			unknown protein		Lus10029322 [exp]	60.5	0.7139
AT1G73390			Endosomal targeting BRO1-like ...		Lus10031881 [exp]	61.2	0.7161

Compare expression of checked genes

Lus10009991 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.