Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62260 381 / 4e-131 Protein phosphatase 2C family protein (.1.2) AT1G48040 324 / 7e-109 Protein phosphatase 2C family protein (.1) AT3G17250 302 / 1e-99 Protein phosphatase 2C family protein (.1) AT2G33700 276 / 4e-90 Protein phosphatase 2C family protein (.1) AT3G51470 263 / 2e-85 Protein phosphatase 2C family protein (.1) AT2G25620 238 / 4e-75 AtDBP1 DNA-binding protein phosphatase 1 (.1) AT4G31750 130 / 6e-35 WIN2 HOPW1-1-interacting 2 (.1) AT5G24940 128 / 5e-33 Protein phosphatase 2C family protein (.1) AT5G10740 124 / 6e-32 Protein phosphatase 2C family protein (.1) AT1G43900 112 / 8e-28 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038058 [exp] 617 / 0 AT3G62260 442 / 4e-155 Protein phosphatase 2C family protein (.1.2) Lus10037832 [exp] 340 / 6e-115 AT1G48040 429 / 3e-150 Protein phosphatase 2C family protein (.1) Lus10017106 [exp] 338 / 2e-114 AT1G48040 422 / 2e-147 Protein phosphatase 2C family protein (.1) Lus10016030 [exp] 285 / 4e-93 AT2G33700 550 / 0.0 Protein phosphatase 2C family protein (.1) Lus10030731 [exp] 280 / 2e-91 AT2G33700 553 / 0.0 Protein phosphatase 2C family protein (.1) Lus10013213 [exp] 279 / 6e-91 AT2G33700 541 / 0.0 Protein phosphatase 2C family protein (.1) Lus10012244 [exp] 280 / 1e-90 AT2G33700 533 / 0.0 Protein phosphatase 2C family protein (.1) Lus10001682 [exp] 248 / 5e-79 AT2G25620 381 / 6e-131 DNA-binding protein phosphatase 1 (.1) Lus10008091 [exp] 240 / 4e-76 AT2G25620 488 / 1e-173 DNA-binding protein phosphatase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G115500 [exp] 471 / 2e-166 AT3G62260 461 / 2e-162 Protein phosphatase 2C family protein (.1.2) Potri.002G190400 [exp] 419 / 3e-146 AT3G62260 436 / 6e-153 Protein phosphatase 2C family protein (.1.2) Potri.010G151500 [exp] 340 / 5e-115 AT1G48040 418 / 8e-146 Protein phosphatase 2C family protein (.1) Potri.008G100700 [exp] 329 / 1e-110 AT1G48040 376 / 5e-129 Protein phosphatase 2C family protein (.1) Potri.005G253700 [exp] 283 / 2e-92 AT2G33700 584 / 0.0 Protein phosphatase 2C family protein (.1) Potri.005G102500 [exp] 280 / 2e-91 AT3G51470 496 / 8e-177 Protein phosphatase 2C family protein (.1) Potri.007G058700 [exp] 278 / 8e-91 AT3G51470 502 / 3e-179 Protein phosphatase 2C family protein (.1) Potri.002G007500 [exp] 275 / 2e-89 AT2G33700 560 / 0.0 Protein phosphatase 2C family protein (.1) Potri.018G033000 [exp] 247 / 7e-79 AT2G25620 478 / 3e-169 DNA-binding protein phosphatase 1 (.1) Potri.006G248400 [exp] 245 / 4e-78 AT2G25620 478 / 5e-169 DNA-binding protein phosphatase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10009993 pacid=23176672 polypeptide=Lus10009993 locus=Lus10009993.g ID=Lus10009993.BGIv1.0 annot-version=v1.0 ATGGGAGCTGAAGCAGCAGCAGAGGTAGTAGTTTGTCAGCAGAGCGTCGGAGTTCCGGTGCTGGATGTTCAGCTGGTTGATGCCAGGTTGAGCCATCGAG TTGGAATCGAGGACACGGCTGAATTGTGCGGCTCGCAAGAGGATATTGATGTTAAGCCGGTTCACAAGATCGCCGAGGAAGTTCTGGAGGCCGTTGGATT ACAATTCGTTCCCAGCATTCGTTCTGGGAGTTTTGCGGATATTGGTCCTCGGAGATACATGGAAGACGAGCATATACGAATTGATGATCTATCAACACAT TTAGGCTCACTCTTCACATTTCCAAGGCCAAGTGCTTTTTATGGGGTTTTCGACGGTCATGGAGGACCGGACGCTGCAGCGTACATTCGGAAGAACGTGA TGAGGTTCTTCTTCGAAGATGTCAAGTTCCCTCAGACATCCGAAGTCGATCCAATCTTTTTGGAAGAGGTGGAGAATTCCCTTAGGGAAGCTTTCCTCCT TGCTGATCTAGCTTTGGCTGATGATGGTAGTGTCAGCAGCTCTTCTGGGACGACAGCGATTGCTGCATTCGTATTTGAAAGGCTCCTACTAGTGGCCAAT GCCGGCGACTGCAGAGCGGTACTCTGCCGAAAAGGCGAAGCAATCGACATGTCACAAGACCATCGACCCATATACCCATCTGAACGGAGGAGGGTCGAGC AGCTAGGGGGATACATCGACGACGGATACCTAAACGGGGTGCTATCCGTGTCGCGAGCACTCGGAGATTGGGACATGAAGAAACTCCCGGGGAGCTCCTC TTCATTGACACCGCCTTCTCCTCTGATATCGGAGCCGGAGTTTCGTCGGCTGTCGCTCACGGAGGACGACGAGTTCCTTATCCTTGGGTGCGACGGGATA TGGGACGTGATGTCGAGCCAGCATGCCGTTGGGATCGTGAGGCGTGGATTGCGTCGGCACGATGACCCTGAGCAGTGTGCTAGAGACCTTGTGATGGAGG CATTGAGGAGAAACACATTCGACAACCTGACGGTGATTGTGGTGTGCTTTTCGGAGCCGTCGTCTCCGAGACCGGCCAAGCTGAGGAGGGGGAAGTGTTG TAGCTTGTCTGCGGATGCGTTGTGTAGCTTGAGGAACTTGCTGGATGGGTAA
AA sequence Show only first row Show all	>Lus10009993 pacid=23176672 polypeptide=Lus10009993 locus=Lus10009993.g ID=Lus10009993.BGIv1.0 annot-version=v1.0 MGAEAAAEVVVCQQSVGVPVLDVQLVDARLSHRVGIEDTAELCGSQEDIDVKPVHKIAEEVLEAVGLQFVPSIRSGSFADIGPRRYMEDEHIRIDDLSTH LGSLFTFPRPSAFYGVFDGHGGPDAAAYIRKNVMRFFFEDVKFPQTSEVDPIFLEEVENSLREAFLLADLALADDGSVSSSSGTTAIAAFVFERLLLVAN AGDCRAVLCRKGEAIDMSQDHRPIYPSERRRVEQLGGYIDDGYLNGVLSVSRALGDWDMKKLPGSSSSLTPPSPLISEPEFRRLSLTEDDEFLILGCDGI WDVMSSQHAVGIVRRGLRRHDDPEQCARDLVMEALRRNTFDNLTVIVVCFSEPSSPRPAKLRRGKCCSLSADALCSLRNLLDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62260			Protein phosphatase 2C family ...		Lus10009993 [exp]	0	1
AT2G36320			A20/AN1-like zinc finger famil...		Lus10020594 [exp]	1.7	0.8482
AT2G46080			unknown protein		Lus10007920 [exp]	5.3	0.8319
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10030952 [exp]	5.7	0.7637
AT2G41835	C2H2ZnF		zinc finger (C2H2 type, AN1-li...		Lus10012196 [exp]	7.1	0.8382
AT5G42050			DCD (Development and Cell Deat...		Lus10023059 [exp]	7.5	0.8327
AT2G46080			unknown protein		Lus10018821 [exp]	8.1	0.8101
AT1G01550		BPS1	BYPASS 1, Protein of unknown f...		Lus10005326 [exp]	13.2	0.7876
AT4G03420			Protein of unknown function (D...		Lus10031632 [exp]	14.1	0.6952
AT1G07630		PLL5	pol-like 5 (.1)		Lus10040823 [exp]	15.2	0.7766
AT1G12710		ATPP2-A12	phloem protein 2-A12 (.1)		Lus10029593 [exp]	15.9	0.7749

Compare expression of checked genes

Lus10009993 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.