Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02460 606 / 0 Pectin lyase-like superfamily protein (.1) AT4G01890 552 / 0 Pectin lyase-like superfamily protein (.1) AT1G48100 534 / 0 Pectin lyase-like superfamily protein (.1) AT1G56710 520 / 0 Pectin lyase-like superfamily protein (.1) AT5G14650 364 / 5e-122 Pectin lyase-like superfamily protein (.1) AT1G10640 356 / 2e-117 Pectin lyase-like superfamily protein (.1) AT1G60590 354 / 1e-116 Pectin lyase-like superfamily protein (.1) AT1G80170 319 / 2e-104 Pectin lyase-like superfamily protein (.1) AT3G26610 313 / 7e-102 Pectin lyase-like superfamily protein (.1) AT1G70500 310 / 1e-100 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038059 [exp] 836 / 0 AT1G02460 542 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10037834 [exp] 514 / 3e-180 AT1G48100 649 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10017109 [exp] 510 / 8e-179 AT1G48100 647 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10030886 [exp] 363 / 2e-120 AT1G10640 658 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10030604 [exp] 360 / 3e-119 AT1G60590 665 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10013025 [exp] 348 / 5e-115 AT1G10640 634 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10029140 [exp] 348 / 1e-114 AT1G60590 660 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10029121 [exp] 316 / 1e-102 AT3G26610 566 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10036084 [exp] 306 / 5e-99 AT1G80170 491 / 2e-172 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G115700 [exp] 685 / 0 AT1G02460 593 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G190600 [exp] 667 / 0 AT1G02460 582 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.005G005500 [exp] 588 / 0 AT1G02460 583 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.013G005000 [exp] 577 / 0 AT1G02460 561 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G152000 [exp] 541 / 0 AT1G48100 603 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G100500 [exp] 536 / 0 AT1G48100 653 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G346800 [exp] 374 / 5e-125 AT5G14650 506 / 5e-178 Pectin lyase-like superfamily protein (.1) Potri.010G042100 [exp] 355 / 3e-117 AT1G60590 675 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G189200 [exp] 348 / 1e-114 AT1G60590 644 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G171900 [exp] 322 / 2e-105 AT1G80170 506 / 1e-178 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10009994 pacid=23176676 polypeptide=Lus10009994 locus=Lus10009994.g ID=Lus10009994.BGIv1.0 annot-version=v1.0 ATGGAGCTTTTCCCAGTTCTTCTCACTATCAACATCATCATCACCGCCACCACCATTACTTCCATGACTCAAGCTAGGTTTCACTACCATAACCATGATC ATCACCACACTAAACACAACCACCCTTCTCAAAATGGTGGCTTAATCTCATACATTTCATCACCTCCAACACTTCCACCTGATGACCTTGATTCTCCCTC TCCTAATTCACCACAACCCCCTCACCCCCCTAGCCCAAAATCGGCAACCTTTTTTCCTCCAGCTCCAGCTCCTGCTAATAATGCTTACGATGATGGCCAA GGGGTGCTTGATGTAAGGAGGTTCGGTGCCATTGGTGATGGTATAACTGATGACACAATTGCATTCAAGATGGCTTGGGATGCGGCTTGCCAAGTTGGTT CTTCTGTAATCCGTGTGCCAAAAGGATTCACATTCATGATCCAATCCACCATTTTCACCGGCCCTTGTCAAAGTGGTGTTATCTTTCAGGTCGACGGGAC AATTACTCCTCCGGATGGACCGGATTCATGGCCGGAGAAGAACAGCAAGAGACAATGGCTGGTGTTCTACAATGTGAACGAAATGTCACTTGTGGGTGGA GGTGGCTTTAATGGCAGAGGACAGAAATGGTGGGATCTTCCATGTAAACCTCACAAGGTTGCGATAAACGGGACGAAGCCACGTGGACCATGCGACAGCC CAGTTGCCATAAGATTCTTTATGAGCTCCAACTTAACAGTGGAAGGAATCAGAATAAAGGACAGTCCACAGTTCAACTTCAGATTTGATAACTGCAAGAA TGTTCACATTGAGTCCATCCATATCACAGCTCCTGCATTGAGTCCCAACACCGATGGAATCCACATTGAGAACACCAATGGTGTTCGGATATACAATTCA ATCGTCTCTAATGGAGACGATTGTGTGTCGATTGGATCAGGTTGTTACGACGTTGACATCAGAAATGTTACATGTGGACCTAGTCATGGAATTAGCATTG GGAGTCTCGGGAATCATAATTCAAGAGCATGTGTATCAAACATCACAGTCAGAGACTCGACGATCAGAGCATCCGATAACGGGGTGAGGATCAAGACGTG GCAGGGCGGGTCAGGGGCGGTATCGGGGGTAACATTTAGCAACATCCATATGGACAATGTTCGTAATCCGATCATTATTGACCAGTTTTACTGCCTGACC AAGGATTGCGACAACCAGACGTCAGCAGTCCACGTGTCGAACGTGGTGTACGAGAACATCAAAGGGACATACGACATTCGTAGCCCTCCGATGCACTTTG GGTGCAGCGATTCAATCCCGTGTACCAACTTGACAATATCTGAAGTAGAGCTTCTCCCCGCGAAAGGGGATGTCGTTTCAGACGCCTACTGCTGGAATGC ATATGGAGATCTTGAGACGCTCACAATCCCTCCTGTTTCTTGCCTAATGGAGGGATCTCCTACTCGATCCATACTAGCTGATCATACCACAGACCGTTGT TTGTAG
AA sequence Show only first row Show all	>Lus10009994 pacid=23176676 polypeptide=Lus10009994 locus=Lus10009994.g ID=Lus10009994.BGIv1.0 annot-version=v1.0 MELFPVLLTINIIITATTITSMTQARFHYHNHDHHHTKHNHPSQNGGLISYISSPPTLPPDDLDSPSPNSPQPPHPPSPKSATFFPPAPAPANNAYDDGQ GVLDVRRFGAIGDGITDDTIAFKMAWDAACQVGSSVIRVPKGFTFMIQSTIFTGPCQSGVIFQVDGTITPPDGPDSWPEKNSKRQWLVFYNVNEMSLVGG GGFNGRGQKWWDLPCKPHKVAINGTKPRGPCDSPVAIRFFMSSNLTVEGIRIKDSPQFNFRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVRIYNS IVSNGDDCVSIGSGCYDVDIRNVTCGPSHGISIGSLGNHNSRACVSNITVRDSTIRASDNGVRIKTWQGGSGAVSGVTFSNIHMDNVRNPIIIDQFYCLT KDCDNQTSAVHVSNVVYENIKGTYDIRSPPMHFGCSDSIPCTNLTISEVELLPAKGDVVSDAYCWNAYGDLETLTIPPVSCLMEGSPTRSILADHTTDRC L

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02460			Pectin lyase-like superfamily ...		Lus10009994 [exp]	0	1
AT3G18180			Glycosyltransferase family 61 ...		Lus10036003 [exp]	3.0	0.9441
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Lus10006664 [exp]	6.6	0.9420
AT4G12010			Disease resistance protein (TI...		Lus10028060 [exp]	7.2	0.9176
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021045 [exp]	8.7	0.9337
AT4G33590			unknown protein		Lus10041131 [exp]	11.0	0.9411
AT3G19430			late embryogenesis abundant pr...		Lus10021837 [exp]	12.2	0.9396
AT4G30420			nodulin MtN21 /EamA-like trans...		Lus10023211 [exp]	13.2	0.9044
AT3G56230			BTB/POZ domain-containing prot...		Lus10010216 [exp]	15.0	0.9222
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10010509 [exp]	18.7	0.9218
AT2G21100			Disease resistance-responsive ...		Lus10034478 [exp]	19.8	0.9166

Compare expression of checked genes

Lus10009994 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.