Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19730 320 / 1e-107 Pectin lyase-like superfamily protein (.1) AT5G47500 282 / 3e-93 PME5 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) AT5G55590 281 / 9e-93 QRT1 QUARTET 1, Pectin lyase-like superfamily protein (.1) AT1G69940 253 / 1e-81 ATPPME1 Pectin lyase-like superfamily protein (.1) AT5G07410 250 / 1e-80 Pectin lyase-like superfamily protein (.1) AT5G61680 248 / 3e-80 Pectin lyase-like superfamily protein (.1) AT2G36710 250 / 5e-80 Pectin lyase-like superfamily protein (.1) AT5G07430 248 / 6e-80 Pectin lyase-like superfamily protein (.1) AT2G21610 248 / 6e-80 PE11, ATPE11 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) AT3G29090 244 / 6e-79 PME31, ATPME31 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028364 [exp] 332 / 2e-113 AT5G19730 437 / 4e-154 Pectin lyase-like superfamily protein (.1) Lus10041815 [exp] 328 / 7e-111 AT5G19730 446 / 1e-156 Pectin lyase-like superfamily protein (.1) Lus10012942 [exp] 316 / 5e-106 AT5G19730 594 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011132 [exp] 288 / 5e-95 AT5G19730 575 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10043035 [exp] 283 / 8e-94 AT5G19730 555 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10004720 [exp] 267 / 4e-87 AT5G47500 519 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) Lus10034893 [exp] 261 / 6e-85 AT5G61680 333 / 2e-113 Pectin lyase-like superfamily protein (.1) Lus10016605 [exp] 260 / 2e-84 AT5G55590 409 / 3e-142 QUARTET 1, Pectin lyase-like superfamily protein (.1) Lus10010470 [exp] 258 / 8e-83 AT1G05310 521 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G117100 [exp] 499 / 2e-178 AT5G19730 320 / 3e-107 Pectin lyase-like superfamily protein (.1) Potri.018G068400 [exp] 316 / 3e-106 AT5G19730 603 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G015700 [exp] 311 / 2e-104 AT5G19730 472 / 2e-167 Pectin lyase-like superfamily protein (.1) Potri.006G137100 [exp] 283 / 2e-93 AT1G69940 355 / 1e-121 Pectin lyase-like superfamily protein (.1) Potri.001G365700 [exp] 278 / 1e-90 AT5G55590 429 / 1e-149 QUARTET 1, Pectin lyase-like superfamily protein (.1) Potri.003G076900 [exp] 273 / 1e-89 AT5G47500 554 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) Potri.015G110700 [exp] 267 / 2e-87 AT1G69940 393 / 2e-136 Pectin lyase-like superfamily protein (.1) Potri.006G120100 [exp] 265 / 7e-86 AT2G36710 449 / 3e-157 Pectin lyase-like superfamily protein (.1) Potri.012G113433 [exp] 263 / 2e-85 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.012G113533 [exp] 263 / 2e-85 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Lus10009997 pacid=23176691 polypeptide=Lus10009997 locus=Lus10009997.g ID=Lus10009997.BGIv1.0 annot-version=v1.0 ATGGCTGCTCCAATGGTATTATTCCATGTTCAAGTTACTCAAATTCTCTTCATGATCTTCATACTAGTACTTGTACCAGTTGCTTCCACTTTTGGAAGTG GTACTACTCTGGATGAGAAGCTAAGGCGCGCTGAGATGAACAAGATCACCATAAGTGTTGGCCGTAATGAGGATTTCCACTCCATAAAAGATGCTCTTGC TACCATTCCTCCTCGTAACACCAGGAGAGTTGTCATTCTTCTCAAACCAGGTGTTTACAGGGAGAAGATTGCAATACCCAAAACTTTGCCCTTCATCACA TTCCTCGGGGACTCCACCGACCCGCCGACCATCACCGGAAACGACACCGCTTCAGTGCCGGGGAATGACGGGATGCCTCTCAGGACATTTCAGAGCGCTA CCGTCGCCATTGACGCCGATTATTTCGTCGCCGTCAACATCAAGTTTGAGAACACGGCTGCACATGTAATCGGAATAAGAGGCGAGCAAGGTGTGGCGAT TCGAGTGTCAGGAACCAAAGCCGCATTCTACAACTGTAGCTTCCATGGGAGCCAGGACACTCTTTACGACCACAAGGGACTTCACTACTTCAACAATTGC CTCATCCAAGGCTCCGTCGACTTCATTTTCGGCTCCGCCATCTCCCTTTATGAGAATTGTGAGTTGAATTCGACGTCAAAGAAAGTAGCATCAATCACGG CTCAAAAGAGGATGAATTTTTCAATGCCAGGTGGGTTTTCTTTCAAAAAATGTTCAATCACAGGGAGTGGGAGGATTTACCTTGGGAGAGCATGGGGTGA TTACTCGAGGGTTGTATTTTCCTACACTTACATGGATCAACTTGTTCTTCCCCAAGGCTGGAACGACTGGGGCAATGCTGACCGAGACAGGAGAGTGTTC TATGGGGAATACAAATGCAGTGGGCCTGGAGCCAATATGACTGGAAGGGTACCGTGGGCTCGAAATCTAACGGATGAAGAGGCCCAGCCCTTTTTAGGTG CTTACTATATTGATGGTGACAAATGGCTCATTGACCCCCTTACTTATTTTCATTAA
AA sequence Show only first row Show all	>Lus10009997 pacid=23176691 polypeptide=Lus10009997 locus=Lus10009997.g ID=Lus10009997.BGIv1.0 annot-version=v1.0 MAAPMVLFHVQVTQILFMIFILVLVPVASTFGSGTTLDEKLRRAEMNKITISVGRNEDFHSIKDALATIPPRNTRRVVILLKPGVYREKIAIPKTLPFIT FLGDSTDPPTITGNDTASVPGNDGMPLRTFQSATVAIDADYFVAVNIKFENTAAHVIGIRGEQGVAIRVSGTKAAFYNCSFHGSQDTLYDHKGLHYFNNC LIQGSVDFIFGSAISLYENCELNSTSKKVASITAQKRMNFSMPGGFSFKKCSITGSGRIYLGRAWGDYSRVVFSYTYMDQLVLPQGWNDWGNADRDRRVF YGEYKCSGPGANMTGRVPWARNLTDEEAQPFLGAYYIDGDKWLIDPLTYFH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19730			Pectin lyase-like superfamily ...		Lus10009997 [exp]	0	1
AT5G54250		HLM1, DND2, ATC...	DEFENSE, NO DEATH 2, cyclic nu...		Lus10010061 [exp]	5.0	0.8164
					Lus10022109 [exp]	5.3	0.7865
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009624 [exp]	7.2	0.8135
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009627 [exp]	8.8	0.8074
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10032159 [exp]	9.2	0.7753
AT1G23965			unknown protein		Lus10030641 [exp]	14.3	0.7847
AT2G23440			unknown protein		Lus10002969 [exp]	15.3	0.7787
					Lus10028567 [exp]	20.6	0.7711
AT5G19580			glyoxal oxidase-related protei...		Lus10043230 [exp]	21.6	0.7671
AT2G28085			SAUR-like auxin-responsive pro...		Lus10021436 [exp]	22.2	0.7639

Compare expression of checked genes

Lus10009997 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.