Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02400 343 / 7e-118 ATGA2OX4, ATGA2OX6, DTA1 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) AT1G47990 287 / 6e-96 ATGA2OX4 Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 4 (.1) AT2G34555 270 / 4e-89 ATGA2OX3 gibberellin 2-oxidase 3 (.1) AT1G30040 270 / 5e-89 ATGA2OX2 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) AT1G78440 240 / 1e-77 ATGA2OX1 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) AT3G19010 125 / 3e-33 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT5G07200 124 / 1e-32 ATGA20OX3, YAP169 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1) AT5G51810 122 / 1e-31 AT2353, GA20OX2, ATGA20OX2 gibberellin 20 oxidase 2 (.1) AT2G38240 119 / 9e-31 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G78550 119 / 1e-30 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025016 [exp] 624 / 0 AT1G02400 367 / 4e-127 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10004511 [exp] 456 / 4e-162 AT1G02400 347 / 3e-119 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10017094 [exp] 305 / 4e-103 AT1G02400 305 / 4e-103 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10037816 [exp] 297 / 2e-100 AT1G02400 298 / 4e-101 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10023311 [exp] 239 / 3e-77 AT1G30040 381 / 6e-133 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) Lus10038498 [exp] 177 / 2e-54 AT1G78440 258 / 2e-86 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) Lus10006350 [exp] 133 / 1e-35 AT4G25420 486 / 1e-172 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10032930 [exp] 132 / 2e-35 AT5G24530 504 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006722 [exp] 130 / 2e-34 AT1G60980 489 / 5e-174 gibberellin 20-oxidase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G191900 [exp] 437 / 9e-155 AT1G02400 394 / 7e-138 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Potri.014G117300 [exp] 433 / 2e-153 AT1G02400 367 / 2e-127 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Potri.008G101600 [exp] 365 / 2e-126 AT1G47990 350 / 2e-120 Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 4 (.1) Potri.010G149700 [exp] 344 / 5e-118 AT1G47990 318 / 4e-108 Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 4 (.1) Potri.001G378400 [exp] 310 / 1e-104 AT1G78440 404 / 1e-141 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) Potri.011G095600 [exp] 301 / 6e-101 AT1G78440 404 / 4e-141 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) Potri.004G065000 [exp] 283 / 2e-94 AT1G30040 448 / 6e-159 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) Potri.011G150200 [exp] 137 / 1e-37 AT4G10500 323 / 1e-109 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451300 [exp] 134 / 1e-36 AT4G10500 326 / 1e-110 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451500 [exp] 134 / 3e-36 AT4G10500 325 / 2e-110 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10009998 pacid=23176707 polypeptide=Lus10009998 locus=Lus10009998.g ID=Lus10009998.BGIv1.0 annot-version=v1.0 ATGGTAGTCCCTTCTACAAATTCGTTCCGGACAAAGAAAACGAGGGCGGTCGGAATCATCCCCACCATCGACCTCTCCTCCTCCGACAGGCCCGCCCTGT CGGAGGCAATCGTCAATGCCTGCGAAGAATTCGGATTCTTCAAGGTGGTCAACCACGGCGTTGACGTGGATGTAGTTTCCCGGTGGGAGAATGAAGTCGC TGACTTCTTCGCCAAGCCTTCCAAGGAGAAACAGAGGGCCGGTCCGGCCGCTCCTTTCGGCTATGGGAGCAAGAACATCGGCTGCAATGGCGACATGGGC GAGCTCGAGTACCTCACTCTTCACACCAACCCGGCTTCCATGTTTGAAAGATCGATGACCATTTCCGACGATCCTGAAAACTTCAGGTTAGCAGGGAATG ATTACATAGATGAGGTTAGAGAATTAGCATGTGAAATTCTTGATCTAACCGCGGAGGGTTTGCGGGTCCAAGATAAATACGTATTTAGCCGTCTAATCAG GGACGTCCATAGTGATTCGGTGATTAGGATCAACCACTATCCATGGGTTAAAAAGAATGAGGTTAAAATTGAGTGGGACCCAACTCCAAAAAGAATTGGT TTTGGAGAGCATTCTGACCCTCAGATCTTAACTCTCCTCCGATCCAACGATGTCCCTGGCCTCCAAATTTGCACTCGCGATGGTTTGTGGCTGTCCGTTC AACCTGACCCCAATGCCTTCTATGCCCTCGTCGGTGATGCATTTCAGGCATTGACAAATGGGAAGTTCGTGAGCGTGAGACACAAGGCGCTAGTGAACTC GACAAGGGCGAGGATGTCAATGATGTACTTCGGTGCACCTGCAATCGATGCATGGATATGCCCGGTGCCGGAAACAGTGTCCCTCAATAACCCATGCCAG TACGAACCTTTCACTTGGGGAGAGTTCAAAAAAGCTGCATACGCAATGCGATTGGCTGATACTCGTCTTGACCTCTTCAGAAAAGTGCACGAGCTAGGAA ATTAA
AA sequence Show only first row Show all	>Lus10009998 pacid=23176707 polypeptide=Lus10009998 locus=Lus10009998.g ID=Lus10009998.BGIv1.0 annot-version=v1.0 MVVPSTNSFRTKKTRAVGIIPTIDLSSSDRPALSEAIVNACEEFGFFKVVNHGVDVDVVSRWENEVADFFAKPSKEKQRAGPAAPFGYGSKNIGCNGDMG ELEYLTLHTNPASMFERSMTISDDPENFRLAGNDYIDEVRELACEILDLTAEGLRVQDKYVFSRLIRDVHSDSVIRINHYPWVKKNEVKIEWDPTPKRIG FGEHSDPQILTLLRSNDVPGLQICTRDGLWLSVQPDPNAFYALVGDAFQALTNGKFVSVRHKALVNSTRARMSMMYFGAPAIDAWICPVPETVSLNNPCQ YEPFTWGEFKKAAYAMRLADTRLDLFRKVHELGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Lus10009998 [exp]	0	1
AT2G36880		MAT3	methionine adenosyltransferase...		Lus10001395 [exp]	5.2	0.7775
AT5G15860		ICME, ATPCME	Isoprenylcysteine methylestera...		Lus10003065 [exp]	9.9	0.6660
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Lus10031840 [exp]	10.0	0.7203
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10004759 [exp]	12.6	0.7093
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10036684 [exp]	13.0	0.6872
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10021652 [exp]	19.8	0.6558
AT4G17570	GATA	GATA26	GATA transcription factor 26 (...		Lus10011008 [exp]	20.5	0.6822
AT2G20440			Ypt/Rab-GAP domain of gyp1p su...		Lus10043064 [exp]	25.3	0.6736
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10010741 [exp]	25.6	0.6719
AT5G13030			unknown protein		Lus10031224 [exp]	28.8	0.6664

Compare expression of checked genes

Lus10009998 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.