Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01940 252 / 6e-85 ATCNFU1, NFU1 NFU domain protein 1 (.1) AT5G49940 112 / 2e-30 ATCNFU2, NFU2 CHLOROPLAST-LOCALIZED NIFU-LIKE PROTEIN 2, NIFU-like protein 2 (.1.2) AT4G25910 97 / 2e-24 ATCNFU3, NFU3 NFU domain protein 3 (.1) AT3G20970 55 / 7e-09 ATNFU2, NFU4 ARABIDOPSIS THALIANA NFU DOMAIN PROTEIN 2, NFU domain protein 4 (.1.2) AT1G51390 52 / 1e-07 ATNFU1, NFU5 NFU domain protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015481 [exp] 117 / 2e-32 AT5G49940 286 / 3e-98 CHLOROPLAST-LOCALIZED NIFU-LIKE PROTEIN 2, NIFU-like protein 2 (.1.2) Lus10025018 [exp] 106 / 4e-29 AT4G01940 79 / 7e-19 NFU domain protein 1 (.1) Lus10001439 [exp] 97 / 3e-24 AT4G25910 263 / 2e-89 NFU domain protein 3 (.1) Lus10001634 [exp] 94 / 2e-22 AT4G25910 260 / 7e-87 NFU domain protein 3 (.1) Lus10034140 [exp] 50 / 2e-07 AT3G20970 369 / 3e-131 ARABIDOPSIS THALIANA NFU DOMAIN PROTEIN 2, NFU domain protein 4 (.1.2) Lus10043440 [exp] 51 / 3e-07 AT3G20970 383 / 1e-134 ARABIDOPSIS THALIANA NFU DOMAIN PROTEIN 2, NFU domain protein 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G192200 [exp] 266 / 1e-90 AT4G01940 263 / 1e-89 NFU domain protein 1 (.1) Potri.014G117700 [exp] 247 / 3e-83 AT4G01940 248 / 1e-83 NFU domain protein 1 (.1) Potri.004G222600 [exp] 112 / 3e-30 AT5G49940 293 / 3e-101 CHLOROPLAST-LOCALIZED NIFU-LIKE PROTEIN 2, NIFU-like protein 2 (.1.2) Potri.003G009300 [exp] 111 / 1e-29 AT5G49940 279 / 1e-95 CHLOROPLAST-LOCALIZED NIFU-LIKE PROTEIN 2, NIFU-like protein 2 (.1.2) Potri.006G165600 [exp] 94 / 2e-23 AT4G25910 300 / 3e-104 NFU domain protein 3 (.1) Potri.010G237400 [exp] 51 / 2e-07 AT3G20970 366 / 2e-128 ARABIDOPSIS THALIANA NFU DOMAIN PROTEIN 2, NFU domain protein 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0232 [flax] [poplar] NifU PF01106 [flax] [poplar] NifU NifU-like domain
Representative CDS sequence Show only first row Show all	>Lus10009999 pacid=23176686 polypeptide=Lus10009999 locus=Lus10009999.g ID=Lus10009999.BGIv1.0 annot-version=v1.0 ATGGCGTCCATGGCATCCGCTGCAATATCCATGGTTCAACCTCATCGTCATCGTGCTGTTATCACTGCATCTAGTTCCATCAACCGTCAGTTTCCACGAG CCATTGGTTTGCTTCCGAACCACGGAGGAAGAAGAGGAAGGATACTTGTGGTCAACGGGCATCGTGGATCCCCGATTCGTGCCGCCGCGAACTCAAGTAC AGATACCGCCGGTTCTACATCGTCGTCTCCGGGGCTTTACTCTGCACAAAAGTTCGATCTAACGGCTCAGAACGTCGACTTAGTCCTGGAGGATGTCAGG CCTTACTTGATCGCCGATGGCGGGAACGTCGACGTCGTGTCCGTGGAAGACGGTGTCATCTCTCTCCAACTGCAAGGAGCCTGTGGGAGTTGCCCTAGTT CAACAACCACCATGAAAATGGGGATTGAAAGAGTGCTGAAAGAAAAATTCGGAGATGCAGTTAAAGACATTCGACAAGTGGGTGGTGAAGATTTGACCGG AGAGGCAACTGTAGAGGCTGTGAATGGCCATCTCGAAATTCTACGACCGGCCATCAACAACTACGGTGGGAGTGTGGATGTGGTATCAATTGAGGGTGGT GAGTGTCAGGTAAGATACACAGGACCCGAGTCTATTGGTTCAGGAGTCAAAGCAGCAATCAAGGAGAAGTTCCCAGATATAAAAAACGTCACATTTGTGG CCTAG
AA sequence Show only first row Show all	>Lus10009999 pacid=23176686 polypeptide=Lus10009999 locus=Lus10009999.g ID=Lus10009999.BGIv1.0 annot-version=v1.0 MASMASAAISMVQPHRHRAVITASSSINRQFPRAIGLLPNHGGRRGRILVVNGHRGSPIRAAANSSTDTAGSTSSSPGLYSAQKFDLTAQNVDLVLEDVR PYLIADGGNVDVVSVEDGVISLQLQGACGSCPSSTTTMKMGIERVLKEKFGDAVKDIRQVGGEDLTGEATVEAVNGHLEILRPAINNYGGSVDVVSIEGG ECQVRYTGPESIGSGVKAAIKEKFPDIKNVTFVA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01940		ATCNFU1, NFU1	NFU domain protein 1 (.1)		Lus10009999 [exp]	0	1
AT3G52230			unknown protein		Lus10037916 [exp]	3.9	0.8157
AT1G43670		FINS1, AtcFBP	FRUCTOSE INSENSITIVE 1, Arabid...		Lus10018885 [exp]	9.5	0.8004
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10043196 [exp]	10.2	0.7864
AT5G60540		EMB2407, ATPDX2...	EMBRYO DEFECTIVE 2407, pyridox...		Lus10034326 [exp]	11.1	0.7316
AT4G10000			Thioredoxin family protein (.1...		Lus10001283 [exp]	12.6	0.7895
AT2G01110		TATC, PGA2, APG...	unfertilized embryo sac 3, TWI...		Lus10007945 [exp]	13.0	0.7722
AT2G48020			Major facilitator superfamily ...		Lus10027976 [exp]	14.3	0.7723
AT4G27250			NAD(P)-binding Rossmann-fold s...		Lus10021294 [exp]	14.5	0.7536
AT5G58950			Protein kinase superfamily pro...		Lus10015436 [exp]	14.9	0.7469
AT3G25570			Adenosylmethionine decarboxyla...		Lus10019146 [exp]	16.9	0.7961

Compare expression of checked genes

Lus10009999 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.