Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62330 376 / 1e-126 Zinc knuckle (CCHC-type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025019 [exp] 763 / 0 AT3G62330 415 / 1e-141 Zinc knuckle (CCHC-type) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G192800 [exp] 470 / 9e-164 AT3G62330 468 / 1e-162 Zinc knuckle (CCHC-type) family protein (.1) Potri.014G118100 [exp] 459 / 3e-159 AT3G62330 424 / 1e-145 Zinc knuckle (CCHC-type) family protein (.1) Potri.010G244600 [exp] 49 / 2e-06 AT5G22040 162 / 3e-48 unknown protein Potri.008G015500 [exp] 46 / 2e-05 AT5G22040 150 / 9e-44 unknown protein Potri.008G001700 [exp] 45 / 5e-05 AT5G22040 155 / 7e-46 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010000 pacid=23176715 polypeptide=Lus10010000 locus=Lus10010000.g ID=Lus10010000.BGIv1.0 annot-version=v1.0 ATGGCAACTACATCAGATATGGATGATGATGACTTTAAGGACATCTACAAGGAGTATACTGGCCCTGTAGCATCAACGGCTAACAATAACAAGGAGCCGC CAAAACCAAATAATCAGCCCCAAGCTGGTTCGGACGAGGAAGAGGGGCCTCTGTCCGTTGACCCCAATGCCGTCCCAACTGATTTCACCAGTAGGGAGGC TAAGGTCTGGGAAGCTAAGTCGAAAGCCACAGAGCGGAACTGGAAAAAAAGGAAAGAAGAAGAGTTGATATGCAAAATCTGCGGTGAATCTGGTCATTTC ACTCAGGGGTGCCCATCTACTCTTGGCGCTAATCGCAAGTTGCAAGATTTCATGGAAAGGGTTCCAGCTAGGGAGAAGCATATTAGAGCCCTGTTTACTG AAAAGGCAATGGAAAGGATTGAAAGAGATATCGGATGCAGGCTCAAAATGGATGAGAAGTTTATCATTGTTAGTGGAAAGGACAGGTTGATTTTGAAGAA AGGTGTTGATGCAGTCCACAGAGTGATTAAGAGCGATGGTGATCATAAGGGCTCCTCTACTTCTCATATGAGCAGGTCTAGGTCACCGGAACGGAGTCCT CCCTCGTCTCGTTTAAGACGCTCTGAACCTCAGAGGTCTTATCCAAGTTACCCTCGTGATACATCACAATATCAACCTAGATTTGGAAGGCAAGATAAGA TTGTAGAAGATCATACTCGTGAGGATATGCAGAAATTCTCAAGAGGTTCTCCACAAGCTTATGGGAAAGATGGAAGTAGAAGTCGTGCAAGCCATTCCAA GTCTCCTGGTCGTCCACTGCATCGTAGTAGTGACTCGTACGGTTCATACGATGGTCACACCCGTAGCAGGATAGATGGATGGGATGATGCAAGGAGACAG GGTCCTGATCCAACCGGCCAACAGTTTGAGTACTCTAGCTTCCCTCGGACGCTAGAAATATTAGAGCTAGAATATAAAAAAGAGGCAATGATGCTTGCCA GGATCCATGACAAGGAAGCAGATGAAGAAAATAATAAACATCGCCAGACTATGAGCGACATTCGTGACAACTACTTGAAGAAACTATCTACCTTACGTGG CAATCAAGGCAGACAGTTTGAGGATTTCTTTCAGCAACTTGAGGACGATGCTGAAAGACAGCAAAAGGAAGCGCAGCACCAGATGGCCGGTTCGGGTTTT GGAAGTTTCGGCAATCAACAACCCTATCCTGCCTATGATGGAGGAGGATCTTCGGCACAATATCATCACCTTGCCGGAGGTGCAAGTTTGTCCATGGGAT CAAGTCCCAGATACCAAGCTCATATGGAGAGTTATCCTCCAAGGCGGCCTCATAATGACAACTACGGTGAGTTTCAGCGTCCGAGGCATTCCGATTTTGG GAAATCGTATAACCGTTACTAG
AA sequence Show only first row Show all	>Lus10010000 pacid=23176715 polypeptide=Lus10010000 locus=Lus10010000.g ID=Lus10010000.BGIv1.0 annot-version=v1.0 MATTSDMDDDDFKDIYKEYTGPVASTANNNKEPPKPNNQPQAGSDEEEGPLSVDPNAVPTDFTSREAKVWEAKSKATERNWKKRKEEELICKICGESGHF TQGCPSTLGANRKLQDFMERVPAREKHIRALFTEKAMERIERDIGCRLKMDEKFIIVSGKDRLILKKGVDAVHRVIKSDGDHKGSSTSHMSRSRSPERSP PSSRLRRSEPQRSYPSYPRDTSQYQPRFGRQDKIVEDHTREDMQKFSRGSPQAYGKDGSRSRASHSKSPGRPLHRSSDSYGSYDGHTRSRIDGWDDARRQ GPDPTGQQFEYSSFPRTLEILELEYKKEAMMLARIHDKEADEENNKHRQTMSDIRDNYLKKLSTLRGNQGRQFEDFFQQLEDDAERQQKEAQHQMAGSGF GSFGNQQPYPAYDGGGSSAQYHHLAGGASLSMGSSPRYQAHMESYPPRRPHNDNYGEFQRPRHSDFGKSYNRY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62330			Zinc knuckle (CCHC-type) famil...		Lus10010000 [exp]	0	1
					Lus10011007 [exp]	1.4	0.9102
AT5G12410			THUMP domain-containing protei...		Lus10019037 [exp]	2.4	0.8946
AT2G43370			RNA-binding (RRM/RBD/RNP motif...		Lus10027015 [exp]	3.7	0.8738
AT1G01150			Homeodomain-like protein with ...		Lus10026308 [exp]	4.5	0.8630
AT5G20040		ATIPT9	ARABIDOPSIS THALIANA ISOPENTEN...		Lus10027928 [exp]	7.5	0.8872
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10037503 [exp]	8.5	0.8602
AT3G54170		ATFIP37	FKBP12 interacting protein 37 ...		Lus10027681 [exp]	8.7	0.8816
AT1G65440		GTB1	global transcription factor gr...		Lus10013071 [exp]	10.0	0.8324
AT5G01630		BRCA2(V), ATBRC...	BRCA2-like B (.1)		Lus10000316 [exp]	10.4	0.8311
AT3G15150		HPY2, ATMMS21	HIGH PLOIDY2, A. THALIANA METH...		Lus10015968 [exp]	12.0	0.8784

Compare expression of checked genes

Lus10010000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.