Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14300 64 / 1e-10 ATPMEPCRC, ATPME26 A. THALIANA PECTIN METHYLESTERASE 26, pectinesterase family protein (.1) AT1G02550 55 / 3e-08 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G53840 56 / 5e-08 ATPME1 pectin methylesterase 1 (.1) AT3G36659 52 / 4e-07 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT2G47340 48 / 7e-06 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G23350 44 / 8e-05 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G17220 42 / 0.0002 ATPMEI2 pectin methylesterase inhibitor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025021 [exp] 318 / 2e-104 AT3G14300 63 / 2e-10 A. THALIANA PECTIN METHYLESTERASE 26, pectinesterase family protein (.1) Lus10002420 [exp] 183 / 1e-53 AT3G36659 54 / 2e-08 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10001448 [exp] 131 / 2e-36 AT1G23350 48 / 7e-08 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031132 [exp] 49 / 1e-06 AT1G62760 135 / 3e-40 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031711 [exp] 45 / 3e-05 AT5G62360 145 / 4e-44 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10020909 [exp] 46 / 7e-05 AT3G05610 547 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10033466 [exp] 46 / 8e-05 AT3G05610 556 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10037457 [exp] 44 / 0.0002 AT1G53840 234 / 1e-72 pectin methylesterase 1 (.1) Lus10037458 [exp] 44 / 0.0004 AT3G14310 491 / 2e-170 pectin methylesterase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G119200 [exp] 123 / 5e-32 AT1G02550 97 / 2e-24 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.014G119400 [exp] 107 / 1e-25 AT1G02550 78 / 2e-16 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.002G194900 [exp] 103 / 6e-25 AT1G02550 87 / 2e-20 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.002G194800 [exp] 102 / 2e-24 AT1G02550 87 / 2e-20 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.002G195000 [exp] 88 / 2e-19 AT1G02550 76 / 3e-16 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.003G072700 [exp] 48 / 1e-05 AT1G53840 723 / 0.0 pectin methylesterase 1 (.1) Potri.013G013400 [exp] 45 / 8e-05 AT3G05610 580 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.001G162700 [exp] 45 / 0.0001 AT1G53840 659 / 0.0 pectin methylesterase 1 (.1) Potri.010G010464 [exp] 45 / 0.0001 AT5G27870 619 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.005G022900 [exp] 43 / 0.0004 AT3G05610 593 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10010002 pacid=23176655 polypeptide=Lus10010002 locus=Lus10010002.g ID=Lus10010002.BGIv1.0 annot-version=v1.0 ATGAAGCTCCCATCCACAGCCATTCTTTTAATCCTCTTAACTTTCATATTTCTCTTCGTTAAATTTACCGATGCTAAATGTGTTCCTCGTAACGCTACCT CCCACGTCAAATTGGTTGATGAAATAGAGTTATCGGGCGGCGACTCTAAAGATTCTAAAGTGGCATCATCAGCAAAGAAGACCACACGACAAGAAACAAC GGTATCTAGTTCTCAAAAAAAAAGTAACGACGATGGCGATGAAAAAGAAAAAACAGTGAAAGAAGACAAAAAAAGTGATTCTCAAGAGAAGAGTAATAAC GATGAGGTCGAAAAAAAGGAAAAGGAATTGAAAGAAGATGAAAAAGGCGATTCGGAGGAGAAGAATAATGACGATGATGACGATAGAAAGGAAAAAAAAT CAAAAGAAGATGAAGAAAGTGATTCTAAAAAGAAAAATTATGACGACGATGATGATAAAAAGGAAAAGAAGTCAAAAGAAGACGAAGAAAGTGATAAGAA AAAGAAAAGTGGCAAAAAGAAAGAAAAGAAAGATGACGATGATGTCGAAAAGGAAGAGGAAAAGAAAGACGATGACGATGATGATGATGAAGAAAAAAAG GAGAAGAAGGACGATGACGATGATGAAGAAAAGAAGGAGAAGAAAGACGATGACGATGATGACGAAAAGAAGGAGAAAAAAGACGACGATGATGACGAAA AGAAGGAGAAAAAGAAAAAAGAAAAAGATGACGGTGATGACAAAAAGAAGGAGAAAAAAGACGACGATGATGACGAAAAGAAGGAGAAGAAGAAAAAAGA AGAAGATGACGGTGATAACAAAAAGAAGGAAAAGAAGAAGAAAGAAGAAGATGACGGTGATGACAAAAAGAAGGAGAAGAAAGATGATGATGATGATGAC GAAAAGAAGAAGAAAGATGACGATGATGACGAGAAGGAGAAATCAGAAAAAGAATCACCCGAGGAGAAAGATAAGGAAGAAGAAGACGAAAAAGAAAAGA AACCAAAACACAAAAAAGAAAACGAAGGTTCCGAAGAGGAAGACAAATCATCTTCATCAGCGTTGAAGGACCCGATCCTCACCCAGAAAGTATGCGGGTT GACCCAATACCCAAAAGATTGTCTGAGCTCGATCTCGCCCTACTTCACAGGGGCCACAGATCCGGAATCGGTACTGAAGATGGAGGTGCAAGCAGTAAGG GAGGGGTTCGTGAGTGCGATCAAGAAGGTGAAGAAGATGAAGGTGGAAGCGGAAGGGAAGTGGGACAAGAGCGCCCTTGACACGTGCGTAGAGAACTTCA GCCTCGGTCTCGTTGATCTCGACACCGCATTGGACGCAATAGCAGCACACGATGCGGACGAGTTGCAGACAATGTTGAGCGCGGTGCTAACGTACGTTAC GACTTGCGAGGACTCGATGGCCGAGGACCCAAACTCGAATGACCTGCCGAACATAACGAGCATGGAGCAGAAGTTGACGAACTTGGCTACTAATAGCTTG GACATAGCCGAGAAACAACTCAATTGA
AA sequence Show only first row Show all	>Lus10010002 pacid=23176655 polypeptide=Lus10010002 locus=Lus10010002.g ID=Lus10010002.BGIv1.0 annot-version=v1.0 MKLPSTAILLILLTFIFLFVKFTDAKCVPRNATSHVKLVDEIELSGGDSKDSKVASSAKKTTRQETTVSSSQKKSNDDGDEKEKTVKEDKKSDSQEKSNN DEVEKKEKELKEDEKGDSEEKNNDDDDDRKEKKSKEDEESDSKKKNYDDDDDKKEKKSKEDEESDKKKKSGKKKEKKDDDDVEKEEEKKDDDDDDDEEKK EKKDDDDDEEKKEKKDDDDDDEKKEKKDDDDDEKKEKKKKEKDDGDDKKKEKKDDDDDEKKEKKKKEEDDGDNKKKEKKKKEEDDGDDKKKEKKDDDDDD EKKKKDDDDDEKEKSEKESPEEKDKEEEDEKEKKPKHKKENEGSEEEDKSSSSALKDPILTQKVCGLTQYPKDCLSSISPYFTGATDPESVLKMEVQAVR EGFVSAIKKVKKMKVEAEGKWDKSALDTCVENFSLGLVDLDTALDAIAAHDADELQTMLSAVLTYVTTCEDSMAEDPNSNDLPNITSMEQKLTNLATNSL DIAEKQLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14300		ATPMEPCRC, ATPM...	A. THALIANA PECTIN METHYLESTER...		Lus10010002 [exp]	0	1
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10037323 [exp]	8.8	0.6345
AT2G26820		ATPP2-A3	phloem protein 2-A3 (.1)		Lus10026891 [exp]	24.7	0.5927
					Lus10029490 [exp]	29.4	0.5869
AT3G19340			Protein of unknown function (D...		Lus10012584 [exp]	33.0	0.5597
AT1G13890		ATSNAP30, SNAP3...	soluble N-ethylmaleimide-sensi...		Lus10036893 [exp]	36.9	0.5709
					Lus10037724 [exp]	45.3	0.5442
AT5G16610			unknown protein		Lus10031615 [exp]	46.9	0.5479
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10018825 [exp]	52.0	0.5549
AT3G02645			Plant protein of unknown funct...		Lus10015084 [exp]	62.7	0.5442
AT4G28703			RmlC-like cupins superfamily p...		Lus10025947 [exp]	64.5	0.5253

Compare expression of checked genes

Lus10010002 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.