Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02570 86 / 1e-19 unknown protein AT1G02575 78 / 7e-17 unknown protein AT2G47360 64 / 1e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025023 [exp] 326 / 1e-112 AT1G02570 116 / 1e-30 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G119900 [exp] 97 / 8e-24 AT2G47360 204 / 1e-64 unknown protein Potri.002G195400 [exp] 97 / 8e-24 AT2G47360 162 / 3e-48 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010004 pacid=23176693 polypeptide=Lus10010004 locus=Lus10010004.g ID=Lus10010004.BGIv1.0 annot-version=v1.0 ATGACTTTGTCGACGGCGGCTGAAGCTTTTCACATCACTGCAACAACCCTCCTCAGCCTCCTCCTCCCCGTCTCATTCCTTCTTATCGCCAGATTGTCTT GCTATAATTACCTCATCGCCGATCAGGACACGTCAGCCTTGTCGTGGTCGTCGACCACATGTCTCAACACCCTCGTCAATATCACTCTATACAGCGTCGT CTCGGTCGTCACCGTGTCCGCTTTGATCAATAGCATAATGGTCAGATCGGAATCGGTCGGACCATTGATTCAACATAAAGGTTGTAATTATAACCGACTA CGGTCGTGCGGGGCTTGGATGTTGATATGTTGTCTCCAGATTTCAGTCCGGCTCGGGGCGGAGCTGGACGGAAGTCGGAGCGCGATGATGGCTACTGTCG TGGCCGTGATTTCGGAGCTGAATGACCGAGACCGAGTAGCTGGGTCGAGTAGTAACGGTTCCGGGTTGTTGATCAGGGCGGGTTTGTTCTTGGGTTTGTA CGAGATCATGTTTCACTGGTTGAATACCGTGGTCCGACCGGTGATCGACAATGCAATTTTTGGTCGGGTTAGAGACGAGTGGTGGGTACAACGAGCGGTG ACCGGGTTGAGCTTCGGCACGTTATGGTGGTGGTGGGGTCTGAACGAGGAAGTGGAGTCGTTGGCAGCTGTGGCGGCCGCAAAATGGAACCGAGCCAGTG AAATCGAAGACGGGTTCAGCCTGGTCGGGTTGGACTTGGTGGGTTGGTAG
AA sequence Show only first row Show all	>Lus10010004 pacid=23176693 polypeptide=Lus10010004 locus=Lus10010004.g ID=Lus10010004.BGIv1.0 annot-version=v1.0 MTLSTAAEAFHITATTLLSLLLPVSFLLIARLSCYNYLIADQDTSALSWSSTTCLNTLVNITLYSVVSVVTVSALINSIMVRSESVGPLIQHKGCNYNRL RSCGAWMLICCLQISVRLGAELDGSRSAMMATVVAVISELNDRDRVAGSSSNGSGLLIRAGLFLGLYEIMFHWLNTVVRPVIDNAIFGRVRDEWWVQRAV TGLSFGTLWWWWGLNEEVESLAAVAAAKWNRASEIEDGFSLVGLDLVGW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02570			unknown protein		Lus10010004 [exp]	0	1
AT3G62020		GLP10	germin-like protein 10 (.1.2)		Lus10038014 [exp]	1.7	0.9838
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Lus10012143 [exp]	4.9	0.9791
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10027864 [exp]	5.9	0.9728
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10002837 [exp]	6.5	0.9781
AT1G58070			unknown protein		Lus10015482 [exp]	7.7	0.9742
AT2G45300			RNA 3'-terminal phosphate cycl...		Lus10030282 [exp]	8.1	0.9737
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10043156 [exp]	8.5	0.9750
AT5G15900		TBL19	TRICHOME BIREFRINGENCE-LIKE 19...		Lus10024167 [exp]	9.9	0.9723
AT4G09990			Protein of unknown function (D...		Lus10005822 [exp]	11.4	0.9681
AT5G26330			Cupredoxin superfamily protein...		Lus10021925 [exp]	12.3	0.9724

Compare expression of checked genes

Lus10010004 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.