Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47390 1418 / 0 Prolyl oligopeptidase family protein (.1) AT4G14570 57 / 5e-08 AtAARE, AARE acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1) AT5G24260 51 / 5e-06 prolyl oligopeptidase family protein (.1) AT5G36210 46 / 0.0002 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025026 [exp] 1567 / 0 AT2G47390 1339 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10025027 [exp] 1551 / 0 AT2G47390 1330 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10039405 [exp] 61 / 5e-09 AT4G14570 902 / 0.0 acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1) Lus10022408 [exp] 50 / 1e-05 AT5G24260 1037 / 0.0 prolyl oligopeptidase family protein (.1) Lus10015363 [exp] 50 / 1e-05 AT4G14570 871 / 0.0 acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1) Lus10018107 [exp] 47 / 6e-05 AT5G24260 1031 / 0.0 prolyl oligopeptidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G120600 [exp] 1474 / 0 AT2G47390 1466 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.002G196000 [exp] 1469 / 0 AT2G47390 1394 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.008G160400 [exp] 58 / 4e-08 AT4G14570 971 / 0.0 acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1) Potri.012G014900 [exp] 57 / 8e-08 AT5G24260 1027 / 0.0 prolyl oligopeptidase family protein (.1) Potri.015G013400 [exp] 56 / 1e-07 AT5G24260 968 / 0.0 prolyl oligopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00326 [flax] [poplar] Peptidase_S9 Prolyl oligopeptidase family
Representative CDS sequence Show only first row Show all	>Lus10010007 pacid=23176688 polypeptide=Lus10010007 locus=Lus10010007.g ID=Lus10010007.BGIv1.0 annot-version=v1.0 ATGACGACGCGCCTTCACAAAGTCTACCATCGCCTCTCTCTCCTCACTGTCTCCCCTCTCCCTTCGCCACCGCACCCTCCTCAATTCCCCGCCGCCCTCG ACTTCAATCTCCGCCGATTCACCTCCGGCCGCCTCCGAACTCAGTCTCTCCGACGGCGGCGCCGCAGCAGCTCGTCATCGTTCATGTCGCCCGCCGATTC TCGACTCCGTAACTTCGCCCCGATCAGTTCGTCAGCTGAAGATGCTGTTGGCGGCGTCTCCGACGGTGGCGCTACTGCTTCCGTCGACGACTACGAAGTA GAAGGGATGGACGGAAAGTATCAATTTCCACCGCCGGAGATAAGGCACATAGTTGATGCTCCGCCACTCCCTGCGTTGTCATTTTCACCTCATAAGGATA AAATTCTGTTTCTGAAGCGGAGGTCGTTGGCTCCACTGTCGGAATTAGCTAGACCGGAGGAGAAACTGGCTGGTATGCGTATAGATGGGCTGTGTAACTC AAGGAGCAGGATGTCGTACTATACTGGAATCGGTATTCATCAGTTAATGGATGATGGTACCCTGGGGCCGGAGAGGGAGGTTTATGGGTTCCCAGAGGGT TCCAAGATCAATTTCGTTACTTTTTCGCCCAATGGTAGGCATTTATGCTTCAGCATCCGTCTCGAGGATGAGGATAACAACAGTAGTAAACTCACAGTAT GGGTTGCGGATATCGAAACTGGACAGGCTAGACCTTTGTTTCAGTCGCCAGATGTTTATCTAAATGCTGTTTTTGACAATTTCGTGTGGGTGGACGATTC AACTTTGCTAGTTTGCACCATCCCAAAGTCTCGTGGAGCACCACCAAAGAAACCTTTGGTTCCATCTGGTCCCAAGATACAGTCCAATGAGACGAAGAGC ATTATTCAAGTCAGAACTTTCCAGGATTTGCTGAAGGATGAATATGATGAAGATTTGTTTGACTACTTTGCCACCTCACAACTTGTTTTAGTCTCTCTGA ATGGTACTGCGAAGGAGATTGGCACGCCGGCTATCTATACATCAATGGATCCTTCTCCAGACCAGAAGTATATGTTGATCAGTTCTATGCACAGGCCATA CTCCTATATCGTACCGTGTGGAAGATTTCCTAAAAAGGTAGAAGTCTGGACAACCAGTGGGGAATTTGTGCGTGAGCTCTGTGATTTGCCCCTTGCTGAA GATATTCCAATTGCATTCAATAGCGTGCGCAAAGGAATGCGTTCAATCAATTGGAGAGCAGATAAGCCTGCAACTCTTTATTGGGCAGAGACACAAGATG GAGGTGATGCAAAAGTAGAAGTATCTCCCCGAGATATAATCTATACACAGCATGCTGATGCAGCAGAAGGTGAACAGCCAGAAATCCTGCACAAGCTTGA TCTTCGCTATGGCGGAATCTCTTGGTGTAATGATTCACTAGCCCTAATTTATGAATCATGGTACAAGACAAGACGGATAAGAACCTGGTTATCTCCAGGA GTCGAAGGTTCTTCTCCACGCATATTATTTGACAGGTCATCTGAGGATGTGTATTCTGATCCCGGTTCCCCCATGCTGAGGAGAACAAGTGCTGGGACTT ATGTGATTGCAACTATAAAGAAAGCAAATGACGATGCCACATATGTTCTACTGAATGGAAGTGGGGCCCCACATGAAGGAAACATTCCATTCCTTGTCCT TTTCGACATAAATACAGGCAACAAGGAACGAATTTGGCAAAGCGACAAGGAAAAGTATTTTGAGACCGTGGTTGCACTTATGTCTGATAACACCGAAGGG GATCTGTGCCTAGATCAATTAAAGATTTTAACATCCCGAGAATCAAAAACGGAGAACACCCAGTATTATATCAAAAAGTGGCCAGAAAAGACTGAATTTC AGATCACAAATTTTCCTCATCCCTACCCACAGTTGGCGTCCCTGCAAAAGGAGATGATTAGATATCAGAGAAAAGATGGAGTTCAACTGACTGCAACATT ATACCTACCACCTGACTATGATCCGTCAAAAGACGGTCCTCTTCCTTGCCTTTTGTGGTCTTACCCAGGCGAATTTAAGAGCAAAGCAGCTGCGGGACAG GTTCGTGGCTCTCCTAATGAATTTCCAGGCATAGGCTCTACATCAGCCCTTCTTTGGCTAGCCAGGAGATTTGCCATTTTATCTGGACCAACGATTCCCA TTGTTGGAGAGGGCGATGAGGAGGCTAATGACAGGTATGTGGAACAATTAGTTGCAAGTGCCGAGGCAGCTGTTGAGGAAGTCATCCGACGTGGCGTTGC TCATCCCAGCAAAATTGCCATCGGTGGACATAGCTATGGTGCCTTCATGACTGCAAACCTCTTGGCACACGCCCCACATCTTTTCGCCTGTGGAATTGCT CGCTCAGGAGCTTATAACAGAACACTGACACCTTTCGGTTTTCAGAATGAGGAGAGGACTCTCTGGGACGCTACGAAAACCTATGTGGAGATGAGTCCGT TCATGTCAGCAAATAAAATTAAGAAGCCAATATTGCTCATCCATGGCGAAGAAGACAACAACCCGGGAACACTAACCATGCAGTCCGATCGTTTCTTCAA CGCTCTAAAAGGTCACGGTGCGCTGTCTCGCTTAGTCATTCTTCCCTATGAGAGCCATGGCTATGCTGCCAGAGAGAGCATTATGCACGTCCTCTGGGAA ACTGACCGGTGGCTGCAGAAGTATTGTGTCTCGAACGCATCTGATGTAAATGCCGAGCTTGATGCGTCTAAAGCCAATCCCAGCAAAGAAACCAAAGATG ACGAGGGTAAAGTAGTAGCTGCCAGTGGAGGTGGAGGAGATCCGGAGCTGGCAGACGACGAGCATGAATCTACTTCAATGATGAATATTAGTTCCATCTC AAGGTAA
AA sequence Show only first row Show all	>Lus10010007 pacid=23176688 polypeptide=Lus10010007 locus=Lus10010007.g ID=Lus10010007.BGIv1.0 annot-version=v1.0 MTTRLHKVYHRLSLLTVSPLPSPPHPPQFPAALDFNLRRFTSGRLRTQSLRRRRRSSSSSFMSPADSRLRNFAPISSSAEDAVGGVSDGGATASVDDYEV EGMDGKYQFPPPEIRHIVDAPPLPALSFSPHKDKILFLKRRSLAPLSELARPEEKLAGMRIDGLCNSRSRMSYYTGIGIHQLMDDGTLGPEREVYGFPEG SKINFVTFSPNGRHLCFSIRLEDEDNNSSKLTVWVADIETGQARPLFQSPDVYLNAVFDNFVWVDDSTLLVCTIPKSRGAPPKKPLVPSGPKIQSNETKS IIQVRTFQDLLKDEYDEDLFDYFATSQLVLVSLNGTAKEIGTPAIYTSMDPSPDQKYMLISSMHRPYSYIVPCGRFPKKVEVWTTSGEFVRELCDLPLAE DIPIAFNSVRKGMRSINWRADKPATLYWAETQDGGDAKVEVSPRDIIYTQHADAAEGEQPEILHKLDLRYGGISWCNDSLALIYESWYKTRRIRTWLSPG VEGSSPRILFDRSSEDVYSDPGSPMLRRTSAGTYVIATIKKANDDATYVLLNGSGAPHEGNIPFLVLFDINTGNKERIWQSDKEKYFETVVALMSDNTEG DLCLDQLKILTSRESKTENTQYYIKKWPEKTEFQITNFPHPYPQLASLQKEMIRYQRKDGVQLTATLYLPPDYDPSKDGPLPCLLWSYPGEFKSKAAAGQ VRGSPNEFPGIGSTSALLWLARRFAILSGPTIPIVGEGDEEANDRYVEQLVASAEAAVEEVIRRGVAHPSKIAIGGHSYGAFMTANLLAHAPHLFACGIA RSGAYNRTLTPFGFQNEERTLWDATKTYVEMSPFMSANKIKKPILLIHGEEDNNPGTLTMQSDRFFNALKGHGALSRLVILPYESHGYAARESIMHVLWE TDRWLQKYCVSNASDVNAELDASKANPSKETKDDEGKVVAASGGGGDPELADDEHESTSMMNISSISR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47390			Prolyl oligopeptidase family p...		Lus10010007 [exp]	0	1
AT1G22770		FB, GI	gigantea protein (GI) (.1)		Lus10028731 [exp]	1.7	0.8151
AT1G21640		ATNADK2, NADK2,...	NAD kinase 2 (.1.2)		Lus10028677 [exp]	3.7	0.7513
AT5G55710		AtTic20-V	translocon at the inner envelo...		Lus10031203 [exp]	5.8	0.7976
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Lus10032541 [exp]	7.1	0.6731
AT5G47860			Protein of unknown function (D...		Lus10009920 [exp]	7.1	0.7385
AT5G52660	MYB		Homeodomain-like superfamily p...		Lus10027521 [exp]	7.5	0.7663
AT5G50210		SUFE3, OLD5, QS	SULFUR E 3, ONSET OF LEAF DEAT...		Lus10019464 [exp]	8.5	0.7341
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Lus10030757 [exp]	14.7	0.7462
AT3G18770			Autophagy-related protein 13 (...		Lus10006790 [exp]	15.5	0.7474
AT5G38600			Proline-rich spliceosome-assoc...		Lus10003067 [exp]	20.8	0.6750

Compare expression of checked genes

Lus10010007 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.