Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02070 1484 / 0 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) AT4G25540 270 / 2e-74 ATMSH3, MSH3 homolog of DNA mismatch repair protein MSH3 (.1) AT3G24495 256 / 5e-70 ATMSH7, MSH7, MSH6-2 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) AT3G18524 196 / 6e-51 ATMSH2, MSH2 MUTS homolog 2 (.1) AT4G17380 147 / 7e-36 MSH4, ATMSH4 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) AT3G20475 137 / 8e-33 ATMSH5 MUTS-homologue 5 (.1) AT3G24320 118 / 1e-26 CHM1, ATMSH1, CHM, MSH1 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) AT5G54090 83 / 1e-15 DNA mismatch repair protein MutS, type 2 (.1) AT1G65070 82 / 1e-15 DNA mismatch repair protein MutS, type 2 (.1.2) AT5G10950 62 / 1e-09 Tudor/PWWP/MBT superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025030 [exp] 441 / 4e-137 AT4G02070 350 / 7e-104 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Lus10017724 [exp] 249 / 1e-67 AT3G24495 1267 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Lus10005743 [exp] 249 / 1e-67 AT4G25540 1305 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Lus10033095 [exp] 206 / 5e-54 AT3G24495 1138 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Lus10042967 [exp] 201 / 1e-52 AT3G18524 1479 / 0.0 MUTS homolog 2 (.1) Lus10032469 [exp] 196 / 6e-51 AT3G18524 1449 / 0.0 MUTS homolog 2 (.1) Lus10027452 [exp] 164 / 8e-44 AT4G25540 447 / 1e-148 homolog of DNA mismatch repair protein MSH3 (.1) Lus10028966 [exp] 137 / 4e-34 AT4G17380 413 / 3e-137 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Lus10014462 [exp] 114 / 3e-25 AT3G24320 1506 / 0.0 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G121701 [exp] 1634 / 0 AT4G02070 1402 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.014G121601 [exp] 576 / 0 AT4G02070 563 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.008G190950 [exp] 444 / 8e-146 AT4G02070 410 / 2e-133 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.008G191051 [exp] 307 / 1e-95 AT4G02070 294 / 1e-91 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.015G142900 [exp] 253 / 5e-69 AT4G25540 1313 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Potri.006G156314 [exp] 247 / 7e-67 AT3G24495 1348 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.006G159200 [exp] 244 / 3e-66 AT3G24495 1372 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.012G060000 [exp] 197 / 3e-51 AT3G18524 1438 / 0.0 MUTS homolog 2 (.1) Potri.011G089500 [exp] 168 / 2e-42 AT3G20475 1264 / 0.0 MUTS-homologue 5 (.1) Potri.001G156200 [exp] 148 / 4e-36 AT4G17380 1226 / 0.0 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00488 [flax] [poplar] MutS_V MutS domain V CL0023 [flax] [poplar] PF01624 [flax] [poplar] MutS_I MutS domain I CL0023 [flax] [poplar] PF05192 [flax] [poplar] MutS_III MutS domain III CL0023 [flax] [poplar] PF05188 [flax] [poplar] MutS_II MutS domain II CL0023 [flax] [poplar] PF05190 [flax] [poplar] MutS_IV MutS family domain IV
Representative CDS sequence Show only first row Show all	>Lus10010010 pacid=23176683 polypeptide=Lus10010010 locus=Lus10010010.g ID=Lus10010010.BGIv1.0 annot-version=v1.0 ATGTCGTCGGCAAAGAAACGATCCGCTGGCCGATCGCCGCTGGTGAATCAGCAATCGCAGATCACTTCCTTCTTCACTAAAAGGACCAACTCGTCTTCTC CTTCGCCTTCTCCCTCGCCTTCTCCGTCTGTATTGAAACAGACAAAACTAAAACCCCAATCCAACATCAGCAACCCTAACCCTAGCTCTCCGAGTCCGTC TCATTCACCGGTAACTCCTTCTCCGATCCAGTCCAGCTCCAAGAAGCCTCTCCTCGTCATCGGCCAAAGCCCTTCTCCGTCGACGCCTGAGGTCGGTGTG AGAACCTACGGGAAGGAGGTGGTGGATAAGAGGATTAGGGTTTATTGGCCGCTGGACAAGGCCTGGTACGAAGGCTGTGTGAAGTCTTATGAAAAGGGTT CGGGTAAGCATTTGATTCAGTACGATGATTCGGAAGAGGAGATGTTGGATTTGGGGAAGGAGAAGGTTGAGTGGATCGGGGAAGCTGTCAAGAAATTGAA GCGGTTGAGGAAGGGTTCTCTGGCGGCTGTTATCAAGCAGGCGGTGGTTGAGGGAGAAGATTTGGAGGACGCTGAGGTGGAGAATGGCGGTGGTGGTGAT AGTCATGGTGATGATTCTAGTGATGAAGATTGGGGAAAGAATGTGGTGGAAGATGTCAGCGATGGCGAGGAGGACCAGATGGATCTGGAAGAGGAGGATG AGGATGATGCTGGAGATAGGAAGAGAGTAGGGAAGCAAGGAGTGAAGAGAGCAAAGAAGAACGACTCGCGAAAACGGAAGGGAAGCTCTGAAGTGAAGGT AGATTCTGGTAAGAAGGGCAGGAACAATGGAGAATTGAGTACAGAAGCCTCGAAATGGCCAGCCTTGGAGCCAGTAAAGAATGTGCACACTGGAGAAACC GTTGCATTGGGAAGATTTGAGATGCGTGAATCCGAGAAGCTGTGGTTTCTTGGAGTAAGACGTCGAGATGCAAAAAGAAGACTGCCTACAGACGGAGACT ATGATCCTAGGACCCTATACTTGCCTCCTGATTTTGTAAGGAGTTTATCTGATGGCCAGAAGCAATGGTGGGAGTTTAAGTCCAAGCACATGGACAAGGT TTTATTCTTCAAGATGGGAAAGTTTTATGAGCTTTTTGAAATGGATGCTCATATAGGAGCTAAAGAACTTGATTTAAACTTTTCAATGAATGTAGAGAAA TTGGCTAGAAAGGGCTATCGAGTTCTTGTGGTGGAGCAGACTGAAACACCTGAACAGCTAGAGCGTCGTCGCAAAGAGAAAGGCTCTAGGGACAAGGTTG TTAAACGTGAGATCTGTGCGGTTGTCACGAGGGGAACACTAACAGAGGGAGAACTGCTTTCAGCAAATCCTGATGCGTCTTATTTGATGGCACTGACTGA AGTTTGTCAGTCAACCCAAAATTTTGAACGGGTGTTTGGCGTTTGTGTAGTTGATGTTGCAACGAGCAGAATAATTCTTGGACAGTTTGGTGACGATGCA GACTGCAGCTCCTTGTGTTGCCTGTTGTCTGAGTTGAGGCCTGTGGAGATTATAAAACCTGCAAAATCTCTGAGTTCTGAGACTGAGAGAGTTATTTCAA GGCATACGAGAAATGTTTTATTTAACGAGTTGGTTCCACTTTCAGAATTCTGGAGTGCCGAGAAAACTATTCATGAAGTCAAAGCTGCTTTAAAGCTCAT CAATTACCAGTCAACTTCTCAATCAGTGAATGAGGCGACCTTGCTTACTAATGTGGAGCAAGAGGATGTGTCCTGTCTACCAGCCGTTTTGCTGCAGCTA GTGAATAAAGGTGAAGATGGAAGCTTAGCACTCTCTGCTTTTGGAGCCACTCTCTATTATCTGAAACAGTCATTTCTGGACGAGGCATTGCTTAGATCAG CGAAATTTGAACGACTCCCATGCTCCGAATTTTGCGATGTTGCTCAAAAACCGTATATGATTCTTGATGCTTCTGCCCTTGAAAACCTTGAGATTTTCGA GAACAGCATAACTGGAGACTCATTTGGGACGCTATATGCTCAAATAAATCATTGTGTGACTGCGTTTGGAAAGAGGTTACTTAAAACGTGGCTTGCAAGA CCTTTATATCATGTTAAATCTATCAAGGATCGCCAGGATGCTGTCTCAGATTTACAGGGGACTAATCAAACAATGGCACTTGAATTCCGGAAAGCATTGT GTAGGCTGCCAGACATGGAGAGACTGCTTACCCGTATGTTTGCCTGCAGTGAAGCTAACGGGAGGAATGCAAGCAAGGTGGTACTGTATGAAGATGCGTC AAAGAAACAGCTGCAAGAATTCACATCTGCTCTACGTGGATGTGAATTAATGGCTCAAGCATGTTCTTCACTCAGTGTCATTCTGCAAACATCAGAGTCT AAAAAACTACGATTTTTGCTGACAGCTGGTGAAGGTCTTCCTGATATCAATTCAGATCTTAATTATTTCAAGGATGGGTTTGATTGGGTGGAAGCGAACA ACACTGGTCGTATAATACCCCACGAGGGAGTTGATATGGTGTATGACTCTGCTTGTAAGAACGTCCATGATATTGAATCTGGTCTGAAAAAAGAATTGAA GGAACAGCGAAAGATCCTTGGAGATGCATCTATAACTTACGTCACGGTTGGGAAAGATGCATATTTATTGGAAGTTCCAGAACATATGAGTGAAAGTATC CCTCAAGAATATGAGCTGCGTTCATCAAAAAAGGGCGCTTGCAGGTATTGGACTCCAAATATTAAGAAACTTTTACCCGAACTGGCCCAAGCTGAATCCG AAAAGGAGTCGGCGTTGAAGAGCATTTTGCAAAGGTTCATTGGTCGTTTTTGTCTAAATCATACCAAGTGGAGACAACTAGTTTCTGTAGTTGCAGAACT TGATGTTTTGATCAGTCTGGCAATTGCTTGTGATTTTTATGAGGGACCAACGTGCCGCCCGGTCATCTTGGATTCTTCATCATCGGCTAGTGAAACCCCA TATCTTTCTGCAAAAGGCTTAGGACATCCTATACTGAGAAGTGATTCCTTAGGCAAGGGATCTTTTGTTTCCAACAATATTAGCATCGGTGGTTTGAATG ATGGAAATTTTATCCTTCTCACGGGTCCAAATATGGGTGGAAAGTCTACTCTTCTTCGACAAATTTGTTTGGCTACAGTTCTAGCGCAGATAGGAGCTGA TGTCCCTGCTGAGAGCTTTGAGTTGTCACCTGTTGACCGGATCTTTGTCCGTATGGGTGCCAAAGATCACATTATGGCTGGCCAAAGTACATTTTTAACA GAGCTTTCAGAAACTGCATTAATGTTGTCATCGGCAACCCGTAATTCATTTGTGGCACTTGATGAACTTGGACGCGGCACTTCAACTTCAGATGGACAAG CAATAGCTGAAGCTGTTCTTGAACATTTTGTAAACAAGGTGCAGTGCCGTGGAATGTTCTCTACTCACTATCACAGATTAGCTGTAGACTATGAGAAGGA TCCCAAGGTCTCCTTATGTCATATGGCATGCAAAATTGGAATTGGAGCTGGTGGAGTGGAGGAAGTAACTTTTCTGTATAGGTTAACACCCGGTGCTTGC CCTAAGAGCTACGGTGTCAATGTTGCAAGACTGGCAGGCCTTCCTGAAAATGTCCTTCAGACAGCTGCTGCTAAGTCTAGCGAAATCGAAGCCCTCTACG GTAAGCACGTCAAGAAAGGCGCGGTGATCAAGGAGAATCAAAGGTCAAAATATGCTGCGTTATGTGGCATCCTTAATTTGGTCAATGGCACAATAAAATC CGATAGCTACGAGCCTTCTCTGGGTACTGGTATCAGTCACCTGATTGAACACCAGCACCAAGCAAGAACACTTCTACTCCAAAACTGA
AA sequence Show only first row Show all	>Lus10010010 pacid=23176683 polypeptide=Lus10010010 locus=Lus10010010.g ID=Lus10010010.BGIv1.0 annot-version=v1.0 MSSAKKRSAGRSPLVNQQSQITSFFTKRTNSSSPSPSPSPSPSVLKQTKLKPQSNISNPNPSSPSPSHSPVTPSPIQSSSKKPLLVIGQSPSPSTPEVGV RTYGKEVVDKRIRVYWPLDKAWYEGCVKSYEKGSGKHLIQYDDSEEEMLDLGKEKVEWIGEAVKKLKRLRKGSLAAVIKQAVVEGEDLEDAEVENGGGGD SHGDDSSDEDWGKNVVEDVSDGEEDQMDLEEEDEDDAGDRKRVGKQGVKRAKKNDSRKRKGSSEVKVDSGKKGRNNGELSTEASKWPALEPVKNVHTGET VALGRFEMRESEKLWFLGVRRRDAKRRLPTDGDYDPRTLYLPPDFVRSLSDGQKQWWEFKSKHMDKVLFFKMGKFYELFEMDAHIGAKELDLNFSMNVEK LARKGYRVLVVEQTETPEQLERRRKEKGSRDKVVKREICAVVTRGTLTEGELLSANPDASYLMALTEVCQSTQNFERVFGVCVVDVATSRIILGQFGDDA DCSSLCCLLSELRPVEIIKPAKSLSSETERVISRHTRNVLFNELVPLSEFWSAEKTIHEVKAALKLINYQSTSQSVNEATLLTNVEQEDVSCLPAVLLQL VNKGEDGSLALSAFGATLYYLKQSFLDEALLRSAKFERLPCSEFCDVAQKPYMILDASALENLEIFENSITGDSFGTLYAQINHCVTAFGKRLLKTWLAR PLYHVKSIKDRQDAVSDLQGTNQTMALEFRKALCRLPDMERLLTRMFACSEANGRNASKVVLYEDASKKQLQEFTSALRGCELMAQACSSLSVILQTSES KKLRFLLTAGEGLPDINSDLNYFKDGFDWVEANNTGRIIPHEGVDMVYDSACKNVHDIESGLKKELKEQRKILGDASITYVTVGKDAYLLEVPEHMSESI PQEYELRSSKKGACRYWTPNIKKLLPELAQAESEKESALKSILQRFIGRFCLNHTKWRQLVSVVAELDVLISLAIACDFYEGPTCRPVILDSSSSASETP YLSAKGLGHPILRSDSLGKGSFVSNNISIGGLNDGNFILLTGPNMGGKSTLLRQICLATVLAQIGADVPAESFELSPVDRIFVRMGAKDHIMAGQSTFLT ELSETALMLSSATRNSFVALDELGRGTSTSDGQAIAEAVLEHFVNKVQCRGMFSTHYHRLAVDYEKDPKVSLCHMACKIGIGAGGVEEVTFLYRLTPGAC PKSYGVNVARLAGLPENVLQTAAAKSSEIEALYGKHVKKGAVIKENQRSKYAALCGILNLVNGTIKSDSYEPSLGTGISHLIEHQHQARTLLLQN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Lus10010010 [exp]	0	1
AT5G52910		ATIM	timeless family protein (.1)		Lus10014946 [exp]	1.7	0.9761
AT1G26330			DNA binding (.1.2)		Lus10000645 [exp]	2.0	0.9727
AT4G00020		BRCA2(IV), BRCA...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10002857 [exp]	2.8	0.9692
AT5G46280		MCM3	MINICHROMOSOME MAINTENANCE 3, ...		Lus10025389 [exp]	3.5	0.9710
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10024521 [exp]	4.9	0.9668
AT4G15890			binding (.1)		Lus10001471 [exp]	5.2	0.9627
AT1G44900		ATMCM2, MCM2	MINICHROMOSOME MAINTENANCE 2, ...		Lus10009052 [exp]	5.3	0.9652
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Lus10040017 [exp]	7.1	0.9676
AT2G05120			Nucleoporin, Nup133/Nup155-lik...		Lus10001742 [exp]	7.6	0.9459
AT5G37630		EMB2656	EMBRYO DEFECTIVE 2656, ARM rep...		Lus10004038 [exp]	8.5	0.9635

Compare expression of checked genes

Lus10010010 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.