Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02610 173 / 4e-54 RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G02075 159 / 1e-48 PIT1 pitchoun 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G02960 120 / 8e-33 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) AT2G01275 114 / 7e-31 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT3G47550 112 / 6e-30 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) AT5G62460 113 / 8e-30 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G14260 103 / 1e-26 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G38070 103 / 2e-26 RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G32670 54 / 3e-08 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G60580 53 / 5e-08 RING/U-box superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025031 [exp] 375 / 1e-133 AT1G02610 178 / 6e-56 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10004058 [exp] 141 / 4e-41 AT2G01275 251 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10002282 [exp] 135 / 1e-38 AT5G38070 219 / 6e-71 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10012826 [exp] 116 / 3e-31 AT2G02960 310 / 2e-106 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10035010 [exp] 110 / 1e-28 AT3G47550 284 / 8e-96 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10021670 [exp] 108 / 3e-28 AT3G47550 275 / 7e-92 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10036754 [exp] 104 / 8e-27 AT2G02960 315 / 1e-108 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10019102 [exp] 104 / 1e-26 AT3G47550 295 / 5e-100 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10034454 [exp] 104 / 1e-26 AT3G47550 296 / 8e-101 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G121900 [exp] 236 / 2e-78 AT1G02610 181 / 2e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.002G196600 [exp] 194 / 1e-62 AT1G02610 183 / 2e-58 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.004G093500 [exp] 141 / 3e-41 AT2G01275 238 / 9e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.010G115600 [exp] 138 / 6e-40 AT2G01275 248 / 1e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.017G122300 [exp] 127 / 8e-36 AT2G01275 246 / 4e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.008G127400 [exp] 124 / 2e-34 AT2G01275 266 / 1e-89 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.010G169200 [exp] 110 / 5e-29 AT3G47550 253 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Potri.008G086300 [exp] 99 / 1e-24 AT2G02960 252 / 9e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.013G126600 [exp] 84 / 3e-19 AT2G02960 159 / 9e-48 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.019G111700 [exp] 82 / 9e-19 AT2G02960 156 / 1e-46 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0229 [flax] [poplar] PF12428 [flax] [poplar] DUF3675 Protein of unknown function (DUF3675)
Representative CDS sequence Show only first row Show all	>Lus10010011 pacid=23176710 polypeptide=Lus10010011 locus=Lus10010011.g ID=Lus10010011.BGIv1.0 annot-version=v1.0 ATGGGTGAATCAGTCGTTCTGTGGATAATCGACGGTGATCACCATCCTCCTCCGTCAAGCTCAGGCAGCAGCTCCACAGCGGCGTACTGCAGGATTTGCC ATGAAGCCGAATTCGAAAGTTTCAAGAGCTTGGAAGCTCCCTGTTCTTGCTCCGGTACCGTCAAGTATGCGCACAGAGATTGTATACAGAGATGGTGCGA CGAGAAAGGGAACACAATCTGCGAAATCTGCCTTCAGAAGTATGAACCAGGTTACACGGTGGCAGTTGAAATATCGTCGAAGAAAGCTGAGATGTTTGAA GAAATGAATACCAGAGATAGCTTGGATATGGTGACAACAAGGGAAGAAGAAGAAGAAGAATTGGTGGCACATGTGGGTCTACGCCACGTGGCTGGAGAAT ATTTGGAACCCACCTCCGCCGCCGATAGAACCGCCGCTGTCTGCCGTTCCTTGGCTTTAACGTTCACATTCCTTATGTTGGTGAGACATTCCTTTCAAAC ACTCGTCGGCGGGGCAAAAGAAGAGTATCCCTTCGCACTCATCACAGTACTCATACTAAGGGCTAGTGGCATTGTTTTCCCTATGTACATTATACTCCGG GTTATATCATCCCTCCAGAAGACAATTCGTCAAAGATATCAGGGTTGCGATGATGGAGAGGAAGATGAAGCAGCAGTCTTCAACGAAGAAGAGCAGCTGC ACTTAGTATAG
AA sequence Show only first row Show all	>Lus10010011 pacid=23176710 polypeptide=Lus10010011 locus=Lus10010011.g ID=Lus10010011.BGIv1.0 annot-version=v1.0 MGESVVLWIIDGDHHPPPSSSGSSSTAAYCRICHEAEFESFKSLEAPCSCSGTVKYAHRDCIQRWCDEKGNTICEICLQKYEPGYTVAVEISSKKAEMFE EMNTRDSLDMVTTREEEEEELVAHVGLRHVAGEYLEPTSAADRTAAVCRSLALTFTFLMLVRHSFQTLVGGAKEEYPFALITVLILRASGIVFPMYIILR VISSLQKTIRQRYQGCDDGEEDEAAVFNEEEQLHLV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02610			RING/FYVE/PHD zinc finger supe...		Lus10010011 [exp]	0	1
AT1G02610			RING/FYVE/PHD zinc finger supe...		Lus10025031 [exp]	1.7	0.8956
AT4G17900			PLATZ transcription factor fam...		Lus10040082 [exp]	4.9	0.8959
AT3G56460			GroES-like zinc-binding alcoho...		Lus10028988 [exp]	8.1	0.8821
AT3G07310			Protein of unknown function (D...		Lus10025896 [exp]	10.0	0.8976
AT2G05160	C3HZnF		CCCH-type zinc fingerfamily pr...		Lus10012333 [exp]	11.2	0.8798
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Lus10039120 [exp]	13.0	0.8470
AT1G55510		BCDH BETA1, BCD...	branched-chain alpha-keto acid...		Lus10013401 [exp]	15.0	0.8950
AT3G07310			Protein of unknown function (D...		Lus10038208 [exp]	15.6	0.8498
AT3G01990		ACR6	ACT domain repeat 6 (.1)		Lus10012550 [exp]	17.2	0.8709
					Lus10040816 [exp]	20.0	0.8340

Compare expression of checked genes

Lus10010011 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.