Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02090 110 / 1e-29 unknown protein AT3G03280 60 / 5e-11 unknown protein AT5G17350 51 / 8e-08 unknown protein AT2G01340 40 / 0.0006 At17.1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035268 [exp] 59 / 1e-10 AT5G17350 116 / 4e-33 unknown protein Lus10013490 [exp] 56 / 1e-09 AT3G03280 110 / 6e-31 unknown protein Lus10007960 [exp] 56 / 2e-09 AT3G03280 109 / 3e-30 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G196900 [exp] 148 / 1e-44 AT4G02090 92 / 3e-23 unknown protein Potri.014G122100 [exp] 138 / 8e-41 AT4G02090 94 / 7e-24 unknown protein Potri.008G127200 [exp] 62 / 7e-12 AT3G03280 127 / 2e-37 unknown protein Potri.010G116000 [exp] 62 / 8e-12 AT3G03280 131 / 4e-39 unknown protein Potri.017G121200 [exp] 56 / 2e-09 AT3G03280 145 / 7e-45 unknown protein Potri.004G094000 [exp] 50 / 1e-07 AT3G03280 143 / 1e-43 unknown protein Potri.015G036800 [exp] 49 / 4e-07 AT1G18290 122 / 1e-35 unknown protein Potri.012G045600 [exp] 46 / 3e-06 AT1G18290 129 / 1e-38 unknown protein Potri.006G105600 [exp] 45 / 1e-05 AT3G03280 63 / 9e-13 unknown protein Potri.006G105500 [exp] 45 / 1e-05 AT3G03280 65 / 2e-13 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010014 pacid=23176711 polypeptide=Lus10010014 locus=Lus10010014.g ID=Lus10010014.BGIv1.0 annot-version=v1.0 ATGCCAAATTACTTCACCGCGGTGGCCAACCCCGCCGCCGCGACGAAAGTGGTCCTACCGGACGGCAAGGTCCATGAGTTTGACGAGCCATTGACTGCGG CGGAGCTGATGTTGGAGCATCCACAACAAGTTGTGGTGGAGTTCGACTCCGAGCTGATGATGATGGCCAGGAACACGAATGGTCATGGACGAAAGGCTAT CCCACTTTCGGCTGACAAGAAACTCGATGCTAACAAGGTTTATTTAATGCTTCCTATGAAACGAGGGAAGCCCTTATCCTTGTCCTCGGAGGAAGCACGT CGTGTCCTTTTGAGCGCCAGCATAGCGCTCAAACAGTCAGCTTCCTCTGCAAAGTTTATGCCTGTGTTCGCAAAAATGTGCACCGCAAATTCAACAGAGG GGCATTATGAAGGGATCTTAGTAAAACTCGTTACCCGAAAAAAGGAGAGTGTAGACAAAAGTCATGAAGACGTGGAAGTGCAGAAGAAGGTACGGAAAGA TGGTAAGAAGCGACTTCTGTCATTTTTCGAAGAGGAGGACGAGGAGGAAGAGATGTGGCTAGAGAACAAGTTGGCGGCGGGACCGGAGTATCTGAGCAGG CAGCTGTCTGGAAAAGGGTGGAGGCCAAGCTTGGATACGATTAAGGAGAAGAAGATTGAGCAACAAAAGCTTCAACATTGGTTATTTTGA
AA sequence Show only first row Show all	>Lus10010014 pacid=23176711 polypeptide=Lus10010014 locus=Lus10010014.g ID=Lus10010014.BGIv1.0 annot-version=v1.0 MPNYFTAVANPAAATKVVLPDGKVHEFDEPLTAAELMLEHPQQVVVEFDSELMMMARNTNGHGRKAIPLSADKKLDANKVYLMLPMKRGKPLSLSSEEAR RVLLSASIALKQSASSAKFMPVFAKMCTANSTEGHYEGILVKLVTRKKESVDKSHEDVEVQKKVRKDGKKRLLSFFEEEDEEEEMWLENKLAAGPEYLSR QLSGKGWRPSLDTIKEKKIEQQKLQHWLF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02090			unknown protein		Lus10010014 [exp]	0	1
AT1G54120			unknown protein		Lus10013152 [exp]	1.4	0.8854
AT1G61930			Protein of unknown function, D...		Lus10002073 [exp]	2.0	0.8734
AT2G39010		PIP2E, PIP2;6	PLASMA MEMBRANE INTRINSIC PROT...		Lus10021475 [exp]	4.2	0.8777
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Lus10021974 [exp]	6.0	0.8807
AT5G43180			Protein of unknown function, D...		Lus10025134 [exp]	6.3	0.8239
AT5G14890			NHL domain-containing protein ...		Lus10033413 [exp]	6.7	0.8540
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10004202 [exp]	8.1	0.8620
AT2G16760			Calcium-dependent phosphotries...		Lus10015347 [exp]	8.4	0.8035
AT1G35720		ATOXY5, ANNAT1	annexin 1 (.1)		Lus10003611 [exp]	8.9	0.8439
AT5G57240		ORP4C	OSBP(oxysterol binding protein...		Lus10040586 [exp]	9.2	0.8202

Compare expression of checked genes

Lus10010014 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.