Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02640 1118 / 0 ATBXL2, BXL2 beta-xylosidase 2 (.1) AT5G49360 1009 / 0 ATBXL1, BXL1 beta-xylosidase 1 (.1) AT5G64570 830 / 0 ATBXL4, XYL4 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) AT3G19620 817 / 0 Glycosyl hydrolase family protein (.1) AT5G09730 812 / 0 ATBXL3, XYL3, BXL3, ATBX3 beta-xylosidase 3 (.1) AT1G78060 715 / 0 Glycosyl hydrolase family protein (.1) AT5G10560 711 / 0 Glycosyl hydrolase family protein (.1) AT5G09700 489 / 1e-165 Glycosyl hydrolase family protein (.1) AT3G47050 168 / 5e-44 Glycosyl hydrolase family protein (.1.2) AT3G47000 145 / 3e-36 Glycosyl hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016858 [exp] 913 / 0 AT5G49360 922 / 0.0 beta-xylosidase 1 (.1) Lus10020966 [exp] 828 / 0 AT5G64570 1181 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) Lus10022374 [exp] 736 / 0 AT1G78060 1065 / 0.0 Glycosyl hydrolase family protein (.1) Lus10019099 [exp] 722 / 0 AT1G78060 1007 / 0.0 Glycosyl hydrolase family protein (.1) Lus10004271 [exp] 704 / 0 AT5G10560 989 / 0.0 Glycosyl hydrolase family protein (.1) Lus10007775 [exp] 489 / 2e-165 AT1G78060 725 / 0.0 Glycosyl hydrolase family protein (.1) Lus10025036 [exp] 305 / 2e-98 AT5G09730 182 / 4e-53 beta-xylosidase 3 (.1) Lus10019240 [exp] 285 / 7e-87 AT5G10560 407 / 1e-133 Glycosyl hydrolase family protein (.1) Lus10037728 [exp] 170 / 4e-49 AT5G49360 177 / 1e-52 beta-xylosidase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G197200 [exp] 1197 / 0 AT1G02640 1189 / 0.0 beta-xylosidase 2 (.1) Potri.014G122200 [exp] 1196 / 0 AT1G02640 1154 / 0.0 beta-xylosidase 2 (.1) Potri.010G141400 [exp] 1083 / 0 AT5G49360 1113 / 0.0 beta-xylosidase 1 (.1) Potri.008G108100 [exp] 1034 / 0 AT5G49360 1104 / 0.0 beta-xylosidase 1 (.1) Potri.001G206800 [exp] 849 / 0 AT5G64570 1168 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) Potri.003G022900 [exp] 830 / 0 AT5G64570 1138 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) Potri.001G294700 [exp] 815 / 0 AT3G19620 1080 / 0.0 Glycosyl hydrolase family protein (.1) Potri.007G114300 [exp] 744 / 0 AT3G19620 776 / 0.0 Glycosyl hydrolase family protein (.1) Potri.002G093900 [exp] 735 / 0 AT1G78060 1069 / 0.0 Glycosyl hydrolase family protein (.1) Potri.005G168500 [exp] 730 / 0 AT1G78060 1069 / 0.0 Glycosyl hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00933 [flax] [poplar] Glyco_hydro_3 Glycosyl hydrolase family 3 N terminal domain CL0058 [flax] [poplar] PF01915 [flax] [poplar] Glyco_hydro_3_C Glycosyl hydrolase family 3 C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10010015 pacid=23176700 polypeptide=Lus10010015 locus=Lus10010015.g ID=Lus10010015.BGIv1.0 annot-version=v1.0 ATGGCCACTAACAACATCAATCTCATACTCCCCCTCGTCCATCTCCTCCTCCTAGCCGCTCCACCGGCTTCTTTTGCCGCCGGAATCGCCCGACGACCTC CGACATTGTTCGCTTGCGACCCAAGCAACGACACGAGCAAGAGCCTAGGGTTCTGTCAGACAAAGCTAGGGATAAAGGAGAGGGTGAAGGATCTGATCGG ACGGCTGACGTTGAAGGAGAAAGTTGGACTCTTGGTCAACAATGCCGGAGGTGTACCGAGGCTTGGTGTCAAGGAGTACGAGTGGTGGTCTGAGGCTCTC CACGGCGTCTCCGACGTTGGGCCCGGTACGAAGTTCGGCGGCAAGTTCCCCGGAGCTACTAGCTTCCCTCAGGTCATTACGACCGCCGCTTCGTTCAATG CCACACTTTGGGAGGCTATTGGCAAGGTAGTGTCGGATGAAGCAAGGGCAATGTACAACGGCGGCGCCGGCGGGCTGACTTACTGGAGCCCGAACGTGAA CGTGGTGCGGGACCCACGGTGGGGCAGAGCACAAGAGACACCAGGAGAGGATCCACTGGTGGTCGGAACTTACGCGGCCAGCTACGTTAGAGGTCTTCAG GGAAACGACGGCGAGCGGCTGAAGGTGGCAGCTTGCTGTAAACACTTCACCGCCTACGACCTCGACAACTGGAACGGCGTCGATCGCTTCCACTTTAACG CCAAGGTAAGCAAGCAAGACATGGAGGACACATTCAACGTGCCATTCAAAATGTGCGTTAAAAACGGCAAAGTAGCGAGTGTTATGTGCTCTTACAACCA AGTGAACGGCGTCCCGACCTGTGCCGATCCGAACCTCCTCCGAAAAACCGTCCGGGGTCAGTGGGGGCTGGATGGCTACATTGTTTCCGACTGTGATTCA GTCGGAGTCTACTACAACACCCAACACTACACCTCGACGCCGGAGGAAGCAGCGGCCGTTGCGATCAAGGCCGGCTTGGACTTGGATTGCGGGCCCTTCT TGGGAACGTACACCGAGAACGCGGTCAAGTCCGGGTTGGTCACCGAGTCTGAAGTGGACGGAGCGTTGGCGAACACGTTGACGGTCCAGATGAGGCTTGG AATGTTCGAGCCGTCGGATCAGAAGTATGGGAACTTGGGCTCGGCGGATGTGTGCACGCCGGCCCATCAGGGGCTTGCGTTGGAGGCGGCCAGGCAAGGG ATTGTGCTTCTTAAGAATCGTCGTTTTGGGCTTCCGCTGTCCGTCACTACGCACCGTAATGTCGCTGTGATTGGGCCCAATTCTAACGCTACCGTCACCA TGATTGGCAATTATGCAGGTGTCGCATGTGGGTACACGTCACCACTCCAAGGAATCTCCGCGTATGCAAAATCGACCATTCACGAACAAGGTTGCGCTGA CGTGGCATGTGTGGATGACAAGCTGTTCGGCTCAGCTGTTGACGCGGCAAGCCACGCTGATGCAACCATACTGGTAATGGGCCTGGATCAATCCATTGAA GCGGAATTCAGGGACAGAGATGGGCTACTGTTGCCGGGCCGTCAACAAGAGCTCGTTTCCAGAGTCGCTGCAGCATCGAGAGGGCCGACCATTTTGGTCC TAATGTCTGGTGGACCGATCGATGTTTCGTTCGCAACGAACGACCCAAAGATATCGGGTATCATATGGGCCGGGTACCCGGGACAAGCCGGCGGAGCTGC TATTGCTGATATATTGTTTGGCACCACAAATCCAGGGGGTAAGCTGCCAATGACGTGGTACCCACAAGAATACCTAACGAATCTACCAATGACCGAGATG GGGATGCGAGCAATCGACTCGAACGGCTATCCCGGACGAACCTACCGATTCTACAAAGGTCCAGTGGTGTACCCATTTGGTCACGGTCTAAGCTACACAA CATTCGTAGAGAACATCGCAACCGCTCCAACCACAGTCCAGGTCCCACTCCATGGCCATCGCAACCCAAACAACACGGTATTGAACAAGGCGATCAAGGT TACACACGTCAGATGCGGTAAGCTCTCGATAGGAATTGAAGCGGACGTGAAGAACACAGGTCGTGCAGACGGAACTCACACATTATTGATCTACTCATCG TCGCCACGTGCCTCGACAGCCAAAGGATGGGCGCCTCACAAGCAGTTGATAGCCTTCCGCAAGGTGCACTTGGCGGCGGGTGCAGGACAACGAGTGAAGA TTAACATCCATGTGTGTAAGTACCTAAGCGTCGTTGATAGGGTTGGTACTCGGCGAATTCCGATGGGGACACATAGTATCCACGTCGGAAATGTCCAGCA TCTGGTTTCGCTCCAAGCGATAACGCTTGGAGTGATCAAGAATTAG
AA sequence Show only first row Show all	>Lus10010015 pacid=23176700 polypeptide=Lus10010015 locus=Lus10010015.g ID=Lus10010015.BGIv1.0 annot-version=v1.0 MATNNINLILPLVHLLLLAAPPASFAAGIARRPPTLFACDPSNDTSKSLGFCQTKLGIKERVKDLIGRLTLKEKVGLLVNNAGGVPRLGVKEYEWWSEAL HGVSDVGPGTKFGGKFPGATSFPQVITTAASFNATLWEAIGKVVSDEARAMYNGGAGGLTYWSPNVNVVRDPRWGRAQETPGEDPLVVGTYAASYVRGLQ GNDGERLKVAACCKHFTAYDLDNWNGVDRFHFNAKVSKQDMEDTFNVPFKMCVKNGKVASVMCSYNQVNGVPTCADPNLLRKTVRGQWGLDGYIVSDCDS VGVYYNTQHYTSTPEEAAAVAIKAGLDLDCGPFLGTYTENAVKSGLVTESEVDGALANTLTVQMRLGMFEPSDQKYGNLGSADVCTPAHQGLALEAARQG IVLLKNRRFGLPLSVTTHRNVAVIGPNSNATVTMIGNYAGVACGYTSPLQGISAYAKSTIHEQGCADVACVDDKLFGSAVDAASHADATILVMGLDQSIE AEFRDRDGLLLPGRQQELVSRVAAASRGPTILVLMSGGPIDVSFATNDPKISGIIWAGYPGQAGGAAIADILFGTTNPGGKLPMTWYPQEYLTNLPMTEM GMRAIDSNGYPGRTYRFYKGPVVYPFGHGLSYTTFVENIATAPTTVQVPLHGHRNPNNTVLNKAIKVTHVRCGKLSIGIEADVKNTGRADGTHTLLIYSS SPRASTAKGWAPHKQLIAFRKVHLAAGAGQRVKINIHVCKYLSVVDRVGTRRIPMGTHSIHVGNVQHLVSLQAITLGVIKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02640		ATBXL2, BXL2	beta-xylosidase 2 (.1)		Lus10010015 [exp]	0	1
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10025678 [exp]	1.4	0.9678
AT4G35240			Protein of unknown function (D...		Lus10012276 [exp]	2.0	0.9649
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10034670 [exp]	3.6	0.9744
					Lus10043485 [exp]	5.5	0.9677
AT1G52150	HD	ATHB15, ICU4, C...	INCURVATA 4, CORONA, Homeobox-...		Lus10002037 [exp]	7.2	0.9507
AT1G43650			nodulin MtN21 /EamA-like trans...		Lus10028585 [exp]	8.5	0.9096
AT1G19835			Plant protein of unknown funct...		Lus10012431 [exp]	8.9	0.9470
					Lus10031340 [exp]	9.6	0.9258
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Lus10031850 [exp]	9.9	0.9587
AT5G44030		IRX5, NWS2, CES...	IRREGULAR XYLEM 5, cellulose s...		Lus10008225 [exp]	10.5	0.9608

Compare expression of checked genes

Lus10010015 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.