Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62580 316 / 8e-111 Late embryogenesis abundant protein (LEA) family protein (.1) AT1G72100 69 / 1e-13 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1) AT1G22600 58 / 6e-10 Late embryogenesis abundant protein (LEA) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025037 [exp] 392 / 5e-141 AT3G62580 341 / 7e-121 Late embryogenesis abundant protein (LEA) family protein (.1) Lus10041310 [exp] 67 / 4e-13 AT1G72100 144 / 9e-40 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1) Lus10000723 [exp] 63 / 3e-11 AT1G72100 305 / 3e-98 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1) Lus10021473 [exp] 60 / 2e-10 AT1G72100 305 / 2e-98 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1) Lus10037401 [exp] 58 / 5e-10 AT1G72100 127 / 5e-34 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G197800 [exp] 342 / 3e-121 AT3G62580 352 / 6e-125 Late embryogenesis abundant protein (LEA) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010016 pacid=23176697 polypeptide=Lus10010016 locus=Lus10010016.g ID=Lus10010016.BGIv1.0 annot-version=v1.0 ATGGGTGTGCTGAGACGTTGGCTGAGCCGATTCCTTGTGGCCGTCGCTTTCCTAGCCGTCGGCGTTGTCTTCTCCCCTGAGACCTTCGGATCATCCAATT CCGTCAAGCAGCTCTCTACCTACCTCAAGCTCGCTCACCTCCTCGCCTTCTCTACTGCCTTCGGCGCCGCTCTCTGGGTCACCTTCATCGGCGGCATCAT CATGTTCAAGAACCTTCCGAGACACCAATTTGGTAACCTGCAGAGCAAGATGTTTCCTGCTTACTTCTCCATGGTTGGAGTTTGCTGCGCCATCTCAGTA GCTGCTTTCGGCTACCTCAACCCTTGGCAATCAGCTTCCACTGCTGAAAGATATCAGCTAGGGTTTCTGTTATCTTCCTTTGCTTTCAACCTCTGCAATT TGTTCGTCTTCACTCCCATGACCGTCCAGATGATGAAGCAAAGGCACAAGATAGAGCGAGAGTTGAACATCGGGGAAGAAGTAGGATGGTCGAAGAACTT GAAAGTTGCAAAGAGTGATCCTAAGCTCGCTTCGATGAACAAGAAATTCGGCATGATCCATGGACTCTCGTCGCTTGCTAACATCATGTCCTTTGGCGGC CTCGCCATCCATTCCTGGTACTTGGCAGGTAAGTTGAATCTGTAA
AA sequence Show only first row Show all	>Lus10010016 pacid=23176697 polypeptide=Lus10010016 locus=Lus10010016.g ID=Lus10010016.BGIv1.0 annot-version=v1.0 MGVLRRWLSRFLVAVAFLAVGVVFSPETFGSSNSVKQLSTYLKLAHLLAFSTAFGAALWVTFIGGIIMFKNLPRHQFGNLQSKMFPAYFSMVGVCCAISV AAFGYLNPWQSASTAERYQLGFLLSSFAFNLCNLFVFTPMTVQMMKQRHKIERELNIGEEVGWSKNLKVAKSDPKLASMNKKFGMIHGLSSLANIMSFGG LAIHSWYLAGKLNL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62580			Late embryogenesis abundant pr...		Lus10010016 [exp]	0	1
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10004646 [exp]	1.0	0.8631
AT1G15230			unknown protein		Lus10035871 [exp]	2.4	0.8247
AT1G07890		ATAPX01, CS1, A...	maternal effect embryo arrest ...		Lus10015970 [exp]	4.2	0.8502
AT2G05830			NagB/RpiA/CoA transferase-like...		Lus10001970 [exp]	4.5	0.8358
AT1G08830		CSD1	copper/zinc superoxide dismuta...		Lus10001719 [exp]	4.9	0.8463
AT1G73480			alpha/beta-Hydrolases superfam...		Lus10009041 [exp]	6.0	0.8118
AT2G44200			CBF1-interacting co-repressor ...		Lus10039128 [exp]	6.8	0.7884
AT5G20900	ZIM	TIFY3B, JAZ12	jasmonate-zim-domain protein 1...		Lus10011929 [exp]	7.7	0.7717
AT4G16210		ECHIA, E-COAH-2	ENOYL-COA HYDRATASE 2, enoyl-C...		Lus10037777 [exp]	11.8	0.8351
AT3G48980			Arabidopsis thaliana protein o...		Lus10039227 [exp]	14.0	0.8225

Compare expression of checked genes

Lus10010016 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.