Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02110 366 / 2e-108 transcription coactivators (.1) AT1G67180 72 / 1e-12 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (.1) AT1G77320 61 / 6e-09 MEI1 meiosis defective 1, transcription coactivators (.1.2) AT4G21070 49 / 3e-05 ATBRCA1 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) AT2G41450 45 / 0.0002 N-acetyltransferases;N-acetyltransferases (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025038 [exp] 1672 / 0 AT4G02110 368 / 1e-109 transcription coactivators (.1) Lus10001455 [exp] 895 / 0 AT4G02110 372 / 1e-108 transcription coactivators (.1) Lus10002432 [exp] 296 / 8e-93 AT4G02110 240 / 7e-72 transcription coactivators (.1) Lus10002431 [exp] 285 / 5e-85 AT4G02110 184 / 2e-49 transcription coactivators (.1) Lus10034088 [exp] 86 / 7e-17 AT1G67180 250 / 2e-76 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (.1) Lus10000854 [exp] 57 / 8e-08 AT1G77320 796 / 0.0 meiosis defective 1, transcription coactivators (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G122400 [exp] 436 / 8e-135 AT4G02110 382 / 4e-112 transcription coactivators (.1) Potri.002G197400 [exp] 415 / 1e-127 AT4G02110 374 / 6e-110 transcription coactivators (.1) Potri.004G106000 [exp] 74 / 3e-13 AT1G67180 237 / 3e-72 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (.1) Potri.005G182500 [exp] 64 / 5e-10 AT1G77320 1011 / 0.0 meiosis defective 1, transcription coactivators (.1.2) Potri.006G218800 [exp] 46 / 0.0001 AT2G26270 522 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0459 [flax] [poplar] BRCT-like PF00533 [flax] [poplar] BRCT BRCA1 C Terminus (BRCT) domain
Representative CDS sequence Show only first row Show all	>Lus10010017 pacid=23176714 polypeptide=Lus10010017 locus=Lus10010017.g ID=Lus10010017.BGIv1.0 annot-version=v1.0 ATGCAGGAAACGACGACGAGTACAACCGCGAAGCCGTTCATCGGCGTCCGCTTTCTCCTATCTGGCTTCGATTCTCCCAACGCGGAACAGGTTCGATCCA AGATTGTGAGATGTGGCGGAGACGAGAGCCAGGATTATACTCATTTGATAGTTGACAACACTGTTTACGATGATCCGATGTGTGTTTCCGCTAGAGAGAA TGGGAAGACAGTGGTTACAGGATTATGGATTGACCACTGTTACGATACTGGATTGGCTGTTGATCCGGCTTCTATAATGTATCAGCCACCAAAAGATTTT AATGGAATACCAGGTGCTAAGAATATCGTTATTTGCTTGACTGGCTACCAGCGTCAAGATAGAGAAGACATTATGACTATGGTCCGCCTCCTGGGTGCGC AATTTTCCAAGCCTTTGGTAGCCACCAACACTACTCATCTCATATGCTATAAGTTTGAAGGTGAGAAGTATGAGCTTGCACGTAGGATGCAAAAGATAAA GCTTGTCAATCATCGTTGGTTAGAAGATTGTTTGAAGAATTGGAAGCTTCTCCCAGAGGACGAATATAATAAGAGTGGCTACGAGTTAGAGATGATGGAA GCCGAAGCAGGTGATTCTGAAGATGATATGGTTGAAACCTCTCCCAAACCGTCTGCTATCCGTGTTACAAGCAAGAGCCCACAGATTACGAAAACCAGAC CTCCAACGACTTGTGACTTGTCGAAATCAACTTCTGAACTTCCTAATATGCAGAATGTGCCTGAAGTTCTCTCTACAGTCCCCGATGCTGAGAATGTGTT GATAGCTCCTGTCAGTAATGTTCAAGGTCATGTTTCTGACTCGATTGCTGGTCCATCAGAGAGAACTCCAGGTTCTGCAAAGGCTGGTTGTTGGAAAGTT GTGTCGGTTTCTGGAAGTGTTGGGAAGCCTTCACCCTCCACTTTGAACTTAACCGCTCTAAGTTACTCCAGGAGAAATTCGCCGTCTTCACTTTCTGCTG CAGCTTCAAATTTTATTGGACGCTCTCCGAAAGTACAAACAGGGGAACCCACGAAGGTCTCTTCTGTTGAGGTTGAAGATGCTAATGGAAGATGTGTCTC TGGTTTTGGAACTTCCGAAAAGTTACTTTCCATAGAAGCATCGGATAGTAACAAGCAAGAGATAAATGCTTTGAAGTCAAGCACCAAAAGTCATGATAGA CAAGCTTGTGTCACGGAAAGTTCATCAGTTTTACTCAACAAGTTACCTGATGGAGATCCTGTTCCCTTCAGTCATGGTATGGCAAGTCCTATTGCTGCAT CGAATTCCAACAGTAACTCTTCTGAAGCTGTAAACTTGAAGGATAAATCACTAGCAAATGGCGGAAACACAACCTTGCATGAAACAGAAACCCAAAGGAC TGATTTAAAGCGTCAATCTTCTTTATGTGAATCGAAAGAGTCTAACTCACCATGCAACCAAGACTGTGGTGATCTTAGTGCAGAGAAATCCAGACTCGAT GCCGACCGTGGCAATCGACAAGGAGTTGACTCATTGGCAAGTAAGGCAGTACTTACTACGTTGGATATGGAACAGAGGCAGGATGATGGCTTGCATCCCA AACAAGTAAAGAAGCACATTGCGACAAAGAAAACGTTGAGATCTAGACTCAAAGTAGGAAGACCCGTGAAGAACAAAGGTTCTGTTCATTTGAAAGAAAG TGCTGTCCAGGAAGATATGGGTATGTCCAAGGAACTTGAGAACAAAGTTTCCTGTGTTGCTCCTCCATTGGAGAATGTGGAAAGAGAACTGGCTCTTGAT GATCTAAGGAGTGATCTCGAGCTTAACACTGGCTTTATGGGTGATGCAACTGATCCAAAGAAGAATGATGCAGAAGGTCCTGGTAGTGATAGGACGAAGA AGAGTAAAGGCCAAGGTCGTCAACCTTTAAGCAAGATCAAGAGAACAAAAGCTTCTACTGCTAATGATAAATCCAACTTCAGCCATTCTATCCAGACAGA AGAAACTCATATTCGCACTGTTAATCAAGTTGCATTGCGAAACCTGACAAATCGTCCTGACAGCAAGAAGAAGAAACTATCTAGGAAAAGGCCACAGAGC TCCATGGAACCAGACAAAGAAAACAACCCACTTATGGATGGGGAAATTATAAATGGTGAAGCGAGAAGGGAACCGATGTGCTTTATATTGAGTGGGGCGA GACTACAGAGGAAGGAGTTTCAGCAGATTATAAAACGATTGAAGGGGAAATCCTGCAAAGATTCGCACCAATGGTCATACCAGGCAACTCATTTCATTGC TCCTGATCCGATCCGCAGAACAGAAAAGTTCTTCGCTGCTTCTGCTTCTGGAAGCTGGATTCTCAAGCCAGAATATCTGTCCGCATGCAATCAAGCAGGA AAATTTCTTCCCGTGGAGCCTTATGAGCTGCATATGAATGGCCTTAGTGAAGATGGAGCTGTAAACTTGGAGGCTCCAAGGAAATGGCGACTGTTGAGAG AGAGAACAGGTCATGGATCGTTTTATGGTATGCGGATTGTCGTTTACGGCCAGTGCATTGCACCACCTTTGGACACGCTGAAACGGGTAGTGAAGGCGGG AGACGGAGCCATAGTAGCGACATCGCCGCCATACAGCCGTTTCCTGGCCTCCGGTGGAGTGGATTACGCCGTCGTCGGCCCTGGAATCACCGTCGCCGAC GTGTGGGTTCAGGAGTTTCTAAGGCATGAGATCCCTTGCGTAGCAGCCGATTACTTGGTGGAGTACGTATGCAAGTCCGGATACTCTCTGGACAAACATG TGCTCTACAATACTCAGAAGTGGGCTGAGAAGTCTTTCACTAAGTTGTTGAGCAAGGCGGAGGAGGTGATCACAGTCGTCGGTCAGGACGTTTTTCCATC GTCGCCGGTGAAAAGTAGTTTGAAGAAGCGGCAGAGGGGGGAGCAGGTGATTTTGGGATCAGGCGAATGA
AA sequence Show only first row Show all	>Lus10010017 pacid=23176714 polypeptide=Lus10010017 locus=Lus10010017.g ID=Lus10010017.BGIv1.0 annot-version=v1.0 MQETTTSTTAKPFIGVRFLLSGFDSPNAEQVRSKIVRCGGDESQDYTHLIVDNTVYDDPMCVSARENGKTVVTGLWIDHCYDTGLAVDPASIMYQPPKDF NGIPGAKNIVICLTGYQRQDREDIMTMVRLLGAQFSKPLVATNTTHLICYKFEGEKYELARRMQKIKLVNHRWLEDCLKNWKLLPEDEYNKSGYELEMME AEAGDSEDDMVETSPKPSAIRVTSKSPQITKTRPPTTCDLSKSTSELPNMQNVPEVLSTVPDAENVLIAPVSNVQGHVSDSIAGPSERTPGSAKAGCWKV VSVSGSVGKPSPSTLNLTALSYSRRNSPSSLSAAASNFIGRSPKVQTGEPTKVSSVEVEDANGRCVSGFGTSEKLLSIEASDSNKQEINALKSSTKSHDR QACVTESSSVLLNKLPDGDPVPFSHGMASPIAASNSNSNSSEAVNLKDKSLANGGNTTLHETETQRTDLKRQSSLCESKESNSPCNQDCGDLSAEKSRLD ADRGNRQGVDSLASKAVLTTLDMEQRQDDGLHPKQVKKHIATKKTLRSRLKVGRPVKNKGSVHLKESAVQEDMGMSKELENKVSCVAPPLENVERELALD DLRSDLELNTGFMGDATDPKKNDAEGPGSDRTKKSKGQGRQPLSKIKRTKASTANDKSNFSHSIQTEETHIRTVNQVALRNLTNRPDSKKKKLSRKRPQS SMEPDKENNPLMDGEIINGEARREPMCFILSGARLQRKEFQQIIKRLKGKSCKDSHQWSYQATHFIAPDPIRRTEKFFAASASGSWILKPEYLSACNQAG KFLPVEPYELHMNGLSEDGAVNLEAPRKWRLLRERTGHGSFYGMRIVVYGQCIAPPLDTLKRVVKAGDGAIVATSPPYSRFLASGGVDYAVVGPGITVAD VWVQEFLRHEIPCVAADYLVEYVCKSGYSLDKHVLYNTQKWAEKSFTKLLSKAEEVITVVGQDVFPSSPVKSSLKKRQRGEQVILGSGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02110			transcription coactivators (.1...		Lus10010017 [exp]	0	1
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10024521 [exp]	1.7	0.9669
AT5G46740		UBP21	ubiquitin-specific protease 21...		Lus10043126 [exp]	2.4	0.9653
AT4G00020		BRCA2(IV), BRCA...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10002857 [exp]	3.5	0.9659
AT4G02110			transcription coactivators (.1...		Lus10001455 [exp]	5.3	0.9489
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10008729 [exp]	5.5	0.9517
AT4G14368			Regulator of chromosome conden...		Lus10030999 [exp]	7.3	0.9304
AT5G37630		EMB2656	EMBRYO DEFECTIVE 2656, ARM rep...		Lus10020813 [exp]	8.5	0.9540
AT3G25100		CDC45	cell division cycle 45 (.1)		Lus10011840 [exp]	8.7	0.9525
AT5G63920		TOP3A, AtTOP3al...	topoisomerase 3alpha (.1)		Lus10004959 [exp]	12.5	0.9308
AT3G25100		CDC45	cell division cycle 45 (.1)		Lus10022775 [exp]	14.7	0.9422

Compare expression of checked genes

Lus10010017 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.